Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   P3F89_RS06485 Genome accession   NZ_CP119875
Coordinates   1232397..1234136 (+) Length   579 a.a.
NCBI ID   WP_000947747.1    Uniprot ID   -
Organism   Bacillus tropicus strain T36S-23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1227397..1239136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3F89_RS06465 (P3F89_06460) ispA 1227610..1228500 (+) 891 WP_000150359.1 (2E,6E)-farnesyl diphosphate synthase -
  P3F89_RS06470 (P3F89_06465) dxs 1228802..1230694 (+) 1893 WP_000366448.1 1-deoxy-D-xylulose-5-phosphate synthase -
  P3F89_RS06475 (P3F89_06470) - 1230698..1231537 (+) 840 WP_033692566.1 TlyA family RNA methyltransferase -
  P3F89_RS06480 (P3F89_06475) argR 1231680..1232129 (+) 450 WP_001032581.1 arginine repressor ArgR -
  P3F89_RS06485 (P3F89_06480) recN 1232397..1234136 (+) 1740 WP_000947747.1 DNA repair protein RecN Machinery gene
  P3F89_RS06490 (P3F89_06485) spoIVB 1234255..1235553 (+) 1299 WP_098524035.1 SpoIVB peptidase -
  P3F89_RS06495 (P3F89_06490) spo0A 1235841..1236635 (+) 795 WP_033686380.1 sporulation transcription factor Spo0A Regulator
  P3F89_RS06500 (P3F89_06495) - 1236923..1238446 (+) 1524 WP_098524034.1 glycosyltransferase family 39 protein -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65755.85 Da        Isoelectric Point: 4.7915

>NTDB_id=801206 P3F89_RS06485 WP_000947747.1 1232397..1234136(+) (recN) [Bacillus tropicus strain T36S-23]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSVLKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGDRIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENDLTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDLVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=801206 P3F89_RS06485 WP_000947747.1 1232397..1234136(+) (recN) [Bacillus tropicus strain T36S-23]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGATTAACGGTTTT
AAGTGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGTGGCCGTGGTTCAGCAGAAT
TTGTTCGATACGGAACAGAAAAAGCTGAAATAGAGGGGCTATTTTATGTAGAAGATGATAAGCATCCATGTATTGAAAAG
GCTGAAGAGTTGGATATAGAAATAGAAGACGGCATGATTATTTTGAAGCGTGATATCGCTGCAAACGGAAAAAGTGTATG
TCGTGTAAATGGGAAACTAGTTACCCTTAGTGTATTAAAAGAAATTGGAAAAACACTTGTTGATATTCATGGGCAGCACG
AAACGCAAGACTTAATGAATGAAGAACGTCATCTATTTATGCTTGATCATTTTGATGGAGATCGTATCGTTAAACAATTG
GATATATACCAAAACGTATACGCTGACTATGAGAAGTTAAAAAAACAGTTAAAATCGTTAAGTGAAAATGAACAACAAAT
GGCGCATCGCTTAGATTTAATCCAATTCCAGCATGAAGAAATCCGTAAGGCGGATTTAAAGATGGATGAAGAAAATGACT
TAACTGAAGAACGATTGCAAATTTCTAATTTCGAAAAAATTTACAAAGCATTAGGGGATGCATATCGCTCGTTAAGTGCT
GACGGACAAGGATTAGATAATGTACGAAGCGCAATGGGACAAATGGAGAGTATTACACATTTAGATGAAGTATATCAAGA
AAATCATGATTCCATTGCAAATAGCTATTACTTATTAGAAGAAGTTGCGTACCAACTGAGAGAAAAGCTCGATATGATGG
AATATGATCCGAATCGTTTAGATGAAATTGAAACGCGTTTAAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAGATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAACAGTTGAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAACTTG
CAGAGCATCTTACAAATGCCATTCATCAGGAATTAAAAGAATTATATATGGAAAAAACAAAATTTGAAGTGAGAATTATG
AAGCGAGAAGGAAATGCGGAAGAGCCTCTCGTGGAGGGAGCACCGGTAAGACTTACGGCGGATGGTTACGATCTTGTGGA
ATTTTATATTTCAACAAATCCAGGTGAGCCGCTAAAACCACTTTCAAAAGTGGCTTCTGGCGGAGAGCTATCTCGTATTA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGTGTTGCATCTGTTATTTTTGATGAAGTGGATACGGGTGTAAGT
GGCCGGGTTGCACAGGCTATTGCGGAAAAAATTTATCGAGTATCAGTAAACTCACAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCATCAATGGCGGATTCGCATTTATTTATTCGAAAACAAGTAGCGAATGATCGAACAATTACATCCGTTACGG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCGGGTGTGGAAATTACAGATTTAACGACAGAACAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.276

100

0.603