Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   RG991_RS11695 Genome accession   NZ_CP133854
Coordinates   2235508..2236245 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain ES4     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2230508..2241245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG991_RS11680 (RG991_11685) clpC 2230962..2233535 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  RG991_RS11685 (RG991_11690) yfiH 2233665..2234396 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  RG991_RS11690 (RG991_11695) rluD 2234393..2235373 (-) 981 WP_000079099.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RG991_RS11695 (RG991_11700) comL 2235508..2236245 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  RG991_RS11700 (RG991_11705) raiA 2236516..2236857 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  RG991_RS11705 (RG991_11710) - 2237008..2237814 (-) 807 WP_000215751.1 site-specific DNA-methyltransferase -
  RG991_RS11710 (RG991_11715) - 2237759..2237956 (-) 198 WP_001353016.1 Com family DNA-binding transcriptional regulator -
  RG991_RS11715 (RG991_11720) - 2238146..2238442 (-) 297 WP_001519189.1 TM2 domain-containing protein -
  RG991_RS11720 (RG991_11725) - 2238578..2238718 (-) 141 WP_000078918.1 Hok/Gef family protein -
  RG991_RS11725 (RG991_11730) - 2238909..2239169 (-) 261 WP_000488107.1 ogr/Delta-like zinc finger family protein -
  RG991_RS11730 (RG991_11735) - 2239212..2240003 (-) 792 WP_348532736.1 contractile injection system protein, VgrG/Pvc8 family -
  RG991_RS25600 - 2239964..2240056 (+) 93 Protein_2130 hypothetical protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=801064 RG991_RS11695 WP_000197686.1 2235508..2236245(+) (comL) [Escherichia coli strain ES4]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=801064 RG991_RS11695 WP_000197686.1 2235508..2236245(+) (comL) [Escherichia coli strain ES4]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376