Detailed information NTG0801061

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PY368_RS09020
• Genome accession: NZ_CP119764
• Coordinates: 1924138..1925010 (-)
• Length: 290 a.a.
• NCBI ID: WP_135318875.1
• Uniprot ID: -
• Organism: Aeromonas hydrophila strain 516
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1919138..1930010

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PY368_RS08995 (PY368_08995)	-	1920874..1922058 (+)	1185	WP_135318872.1	tetratricopeptide repeat protein	-
PY368_RS09000 (PY368_09000)	mutT	1922067..1922480 (+)	414	WP_175044389.1	8-oxo-dGTP diphosphatase MutT	-
PY368_RS09005 (PY368_09005)	yacG	1922541..1922735 (-)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
PY368_RS09010 (PY368_09010)	zapD	1922745..1923467 (-)	723	WP_024945431.1	cell division protein ZapD	-
PY368_RS09015 (PY368_09015)	coaE	1923505..1924119 (-)	615	WP_273775859.1	dephospho-CoA kinase	-
PY368_RS09020 (PY368_09020)	pilD	1924138..1925010 (-)	873	WP_135318875.1	A24 family peptidase	Machinery gene
PY368_RS09025 (PY368_09025)	pilC	1925033..1926274 (-)	1242	WP_017409439.1	type II secretion system F family protein	Machinery gene
PY368_RS09030 (PY368_09030)	pilB	1926390..1928105 (-)	1716	WP_200871048.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
PY368_RS09035 (PY368_09035)	-	1928096..1928536 (-)	441	WP_273775860.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
PY368_RS09040 (PY368_09040)	nadC	1928859..1929716 (-)	858	WP_135318876.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32454.74 Da
• Isoelectric Point: 6.7410

>NTDB_id=801061 PY368_RS09020 WP_135318875.1 1924138..1925010(-) (pilD) [Aeromonas hydrophila strain 516]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETQPQQEERYNLMVPRSACPHCGHA
ITAMENVPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATFAPGWGLLAALLLTWILVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFAPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=801061 PY368_RS09020 WP_135318875.1 1924138..1925010(-) (pilD) [Aeromonas hydrophila strain 516]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTCTCGCTGGTATTCCTCTTTTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTCATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA
ATCCGGAAACACAGCCGCAGCAGGAAGAGCGCTACAACCTGATGGTGCCGCGTTCTGCCTGTCCCCATTGTGGCCACGCC
ATCACGGCCATGGAGAACGTCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGCCAGGCCCCTATCTC
GGCCCGTTATCCTCTGGTGGAGCTGCTGACGGCCCTGCTCTCGCTGGTCGTCGCCGCGACATTCGCACCGGGCTGGGGCT
TGCTGGCCGCCCTGCTGCTCACCTGGATACTGGTGGCGCTCACTTTCATCGATCTGGACAAGATGCTGCTGCCTGACCAG
CTGACCCTGCCACTGCTGTGGGGCGGCCTGCTGTTCAACCTAGCAGGGGGATTTGCACCGCTGGCAGATGCGGTGATCGG
TGCCATGGCCGGCTATCTGGTACTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGTGCCTGGCTCGGCTGGCAGGCACTGCCCATCGTGTTGCTGCTCTCGTCGCTG
GTTGGCGCTTTCATCGGGATTGGCCTCATCCTGCTGCGCAATCATCATCAGAATAAACCCATCCCCTTCGGCCCCTACCT
GGCCATCGCCGGCTGGATCGCACTGTTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.627	98.966	0.6
pilD	Vibrio campbellii strain DS40M4	55.245	98.621	0.545
pilD	Acinetobacter baumannii D1279779	53.521	97.931	0.524
pilD	Acinetobacter nosocomialis M2	53.521	97.931	0.524
pilD	Neisseria gonorrhoeae MS11	48.352	94.138	0.455