Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   L6486_RS12215 Genome accession   NZ_AP022946
Coordinates   2370386..2370664 (+) Length   92 a.a.
NCBI ID   WP_000842216.1    Uniprot ID   A0A9W5QHH7
Organism   Bacillus cereus strain J10     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2365386..2375664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6486_RS12195 (BCJMU10_2377) - 2367065..2367874 (+) 810 WP_063219934.1 papain-like cysteine protease family protein -
  L6486_RS12200 (BCJMU10_2378) - 2367900..2368502 (+) 603 WP_000517271.1 hypothetical protein -
  L6486_RS12205 (BCJMU10_2379) - 2368746..2368997 (-) 252 WP_000827560.1 LuxR C-terminal-related transcriptional regulator -
  L6486_RS12210 (BCJMU10_2380) - 2369370..2370246 (+) 877 Protein_2336 helix-turn-helix domain-containing protein -
  L6486_RS12215 (BCJMU10_2381) abrB 2370386..2370664 (+) 279 WP_000842216.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  L6486_RS12220 (BCJMU10_2382) - 2371276..2372526 (+) 1251 WP_063219936.1 hypothetical protein -
  L6486_RS12225 (BCJMU10_2383) - 2372594..2373352 (+) 759 WP_000347993.1 TSUP family transporter -
  L6486_RS12230 (BCJMU10_2384) - 2373606..2374265 (+) 660 WP_063219937.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10378.28 Da        Isoelectric Point: 10.0092

>NTDB_id=80099 L6486_RS12215 WP_000842216.1 2370386..2370664(+) (abrB) [Bacillus cereus strain J10]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=80099 L6486_RS12215 WP_000842216.1 2370386..2370664(+) (abrB) [Bacillus cereus strain J10]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGCATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGACCAGATTATTTTACGAAAATATCAATCTCCAAGAGCTT
GTGCACTTACAGGGGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAAACGGGATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

50

97.826

0.489

Multiple sequence alignment