Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   P3K45_RS05130 Genome accession   NZ_CP119685
Coordinates   1127598..1128485 (+) Length   295 a.a.
NCBI ID   WP_015729041.1    Uniprot ID   A0A8H9BY74
Organism   Staphylococcus pseudintermedius strain CUVET18-1042     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1122598..1133485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3K45_RS05105 (P3K45_05040) ylqF 1122982..1123854 (+) 873 WP_015729037.1 ribosome biogenesis GTPase YlqF -
  P3K45_RS05110 (P3K45_05045) - 1123847..1124632 (+) 786 WP_140241153.1 ribonuclease HII -
  P3K45_RS05115 (P3K45_05050) - 1124724..1124999 (+) 276 WP_015729039.1 hypothetical protein -
  P3K45_RS05120 (P3K45_05055) sucC 1125266..1126432 (+) 1167 WP_015729040.1 ADP-forming succinate--CoA ligase subunit beta -
  P3K45_RS05125 (P3K45_05060) sucD 1126454..1127359 (+) 906 WP_014614090.1 succinate--CoA ligase subunit alpha -
  P3K45_RS05130 (P3K45_05065) dprA 1127598..1128485 (+) 888 WP_015729041.1 DNA-processing protein DprA Machinery gene
  P3K45_RS05135 (P3K45_05070) topA 1128569..1130638 (+) 2070 WP_014614088.1 type I DNA topoisomerase -
  P3K45_RS05140 (P3K45_05075) trmFO 1130666..1131970 (+) 1305 WP_015729042.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  P3K45_RS05145 (P3K45_05080) xerC 1132070..1132981 (+) 912 WP_015729043.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33464.96 Da        Isoelectric Point: 8.4807

>NTDB_id=800349 P3K45_RS05130 WP_015729041.1 1127598..1128485(+) (dprA) [Staphylococcus pseudintermedius strain CUVET18-1042]
MKQLLLLLLYAGFSTQQIQSCYPKLCALTGNLPQRIQAFKSMLSHMSQFHLQQKLIRLDMLNIHTIEATLHEHQIVPIMI
DEPLYPPLLKEIYDPPLILFCKGRLELLQHSANSLGIVGARQHTAYTPQALETLFNTFQHFPLTIISGLAHGTDALAHHY
AIRHDLSTIGVLGFGHFHHYPKNTQALRQRMEQHHLTLSEYPPYTPIAKFRFPERNRIISGLSKGILITEAKEKSGALIT
LDQALEQNRNVYVLPGDMFNVHTKGNMLRVKEGAEIVLCAQDILKDYANLNVNAL

Nucleotide


Download         Length: 888 bp        

>NTDB_id=800349 P3K45_RS05130 WP_015729041.1 1127598..1128485(+) (dprA) [Staphylococcus pseudintermedius strain CUVET18-1042]
ATGAAACAATTACTACTATTATTACTGTACGCTGGATTTTCAACACAACAAATCCAATCCTGTTACCCTAAACTTTGTGC
TTTAACAGGAAATCTACCTCAGCGCATTCAAGCCTTCAAATCAATGCTTTCGCACATGTCGCAATTCCATTTACAACAAA
AGCTCATACGACTCGATATGCTTAATATTCATACGATTGAAGCGACGTTACATGAACATCAAATTGTCCCGATTATGATA
GACGAACCGCTTTATCCACCACTGTTAAAAGAAATTTATGATCCCCCGTTGATTTTATTTTGTAAAGGACGACTTGAACT
GCTTCAACATTCTGCTAATAGTCTTGGCATTGTAGGCGCAAGGCAACATACAGCATACACGCCACAAGCGCTTGAAACAC
TTTTTAACACATTTCAACATTTTCCACTAACGATTATTTCAGGGCTGGCACACGGTACAGACGCACTCGCACATCATTAT
GCGATTCGACATGACTTGTCCACGATCGGTGTGCTCGGTTTTGGGCATTTTCATCATTATCCTAAAAACACACAAGCATT
ACGCCAGAGGATGGAACAACATCATTTGACTCTAAGCGAATATCCACCTTACACGCCTATTGCTAAATTTAGATTTCCTG
AACGCAATCGCATTATTAGTGGTTTGTCGAAAGGAATACTTATCACTGAAGCAAAAGAAAAAAGTGGCGCGCTCATTACG
TTGGATCAGGCATTAGAACAAAATCGTAATGTTTATGTACTGCCGGGGGATATGTTCAACGTGCATACGAAAGGTAATAT
GCTACGTGTCAAAGAGGGAGCAGAAATTGTATTATGTGCCCAGGATATATTGAAAGATTATGCAAATTTAAATGTTAACG
CTTTGTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

50.69

98.305

0.498
  dprA Staphylococcus aureus N315

50.345

98.305

0.495