Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   P3K38_RS06770 Genome accession   NZ_CP119682
Coordinates   1442923..1443897 (-) Length   324 a.a.
NCBI ID   WP_014613820.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain CUVET18-1965     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1437923..1448897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3K38_RS06735 (P3K38_06645) gcvT 1438497..1439588 (-) 1092 WP_015729161.1 glycine cleavage system aminomethyltransferase GcvT -
  P3K38_RS06740 (P3K38_06650) - 1439746..1440273 (-) 528 WP_014613826.1 shikimate kinase -
  P3K38_RS06745 - 1440437..1440922 (-) 486 WP_080552896.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  P3K38_RS06750 (P3K38_06660) - 1440828..1441028 (-) 201 WP_020219623.1 hypothetical protein -
  P3K38_RS06755 (P3K38_06665) comGD 1441133..1441573 (-) 441 WP_014613823.1 competence type IV pilus minor pilin ComGD -
  P3K38_RS06760 (P3K38_06670) comGC 1441551..1441874 (-) 324 WP_015729165.1 competence type IV pilus major pilin ComGC Machinery gene
  P3K38_RS06765 (P3K38_06675) comGB 1441887..1442954 (-) 1068 WP_014613821.1 competence type IV pilus assembly protein ComGB -
  P3K38_RS06770 (P3K38_06680) comGA 1442923..1443897 (-) 975 WP_014613820.1 competence type IV pilus ATPase ComGA Machinery gene
  P3K38_RS06775 (P3K38_06685) - 1444058..1444687 (-) 630 WP_096535719.1 MBL fold metallo-hydrolase -
  P3K38_RS06780 (P3K38_06690) - 1444700..1445011 (-) 312 WP_014613818.1 MTH1187 family thiamine-binding protein -
  P3K38_RS06785 (P3K38_06695) - 1445012..1445998 (-) 987 WP_065520488.1 ROK family glucokinase -
  P3K38_RS06790 (P3K38_06700) - 1445995..1446198 (-) 204 WP_014613816.1 YqgQ family protein -
  P3K38_RS06795 (P3K38_06705) - 1446200..1447639 (-) 1440 WP_103263428.1 rhomboid family intramembrane serine protease -
  P3K38_RS06800 (P3K38_06710) - 1447658..1448197 (-) 540 WP_014613814.1 5-formyltetrahydrofolate cyclo-ligase -
  P3K38_RS06805 (P3K38_06715) rpmG 1448349..1448498 (-) 150 WP_014613813.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36846.58 Da        Isoelectric Point: 7.5584

>NTDB_id=800324 P3K38_RS06770 WP_014613820.1 1442923..1443897(-) (comGA) [Staphylococcus pseudintermedius strain CUVET18-1965]
MQLLLDHVIQFALQNEASDIHFIPSQSQVEVKLRVKDQLVLYDTLNLETYQKLLTLLKYQAGLDISTRHKAQSGRYIYEH
KALYYLRVSTLPLNLGTESCVIRITPQYFQNAKAHSVLDIKSNMEKKQGLILFSGPTGAGKSTLMYQMVVYAKQKLNLNI
ITIEDPVEQLVNGITQISVNEKADITYGSSLKAILRCDPDVILIGEIRDSHIARDVIQASLSGHLVLSTIHANDCQGVLL
RLIEMGLSHQDLSQSINLIINQRLITTKNDQRQLVYETMDQQEIHYFLNNNFQLPTAFTSLSHKLQLLNKEGVIDEKILR
KYTI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=800324 P3K38_RS06770 WP_014613820.1 1442923..1443897(-) (comGA) [Staphylococcus pseudintermedius strain CUVET18-1965]
ATGCAACTACTATTAGATCATGTAATACAATTTGCACTTCAAAATGAGGCATCAGACATTCATTTTATCCCATCACAATC
ACAAGTCGAAGTGAAACTCAGAGTGAAAGATCAACTTGTATTATATGACACATTAAATCTAGAAACGTATCAAAAATTGT
TAACTTTGTTGAAATACCAAGCTGGATTAGATATTTCGACACGCCACAAAGCGCAAAGTGGGCGCTATATTTATGAACAT
AAAGCGTTATATTATTTAAGAGTGTCCACGTTACCTTTAAACTTAGGTACTGAAAGTTGTGTTATTCGTATTACACCCCA
ATATTTTCAAAATGCGAAAGCTCATAGTGTATTAGACATCAAATCTAATATGGAGAAAAAGCAAGGTTTAATTCTGTTTA
GCGGGCCTACAGGTGCAGGAAAGAGCACGTTAATGTATCAAATGGTCGTCTATGCTAAACAAAAGTTAAACCTGAATATT
ATCACAATAGAAGACCCGGTCGAGCAGCTTGTGAACGGCATTACGCAAATTTCCGTTAACGAAAAAGCTGATATTACGTA
TGGATCGTCGTTAAAAGCAATTCTTCGTTGTGATCCAGATGTCATCTTAATTGGTGAGATTCGTGACAGTCATATTGCAA
GGGACGTTATACAAGCGAGTTTAAGTGGGCATTTAGTATTGTCGACGATACACGCCAATGATTGTCAAGGGGTGCTCCTT
AGACTGATTGAAATGGGACTCTCTCACCAAGATTTATCTCAATCTATCAATCTCATCATCAATCAAAGACTCATTACAAC
AAAAAACGACCAGCGACAACTCGTCTATGAAACGATGGATCAACAGGAGATTCATTACTTTTTGAATAATAACTTCCAAC
TACCTACTGCTTTCACAAGCCTTTCTCATAAGCTTCAACTTCTGAATAAAGAGGGGGTTATAGATGAAAAGATTTTACGA
AAGTATACGATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

58.514

99.691

0.583
  comGA Staphylococcus aureus N315

58.514

99.691

0.583