Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RFN65_RS16040 Genome accession   NZ_CP133703
Coordinates   3107238..3107885 (-) Length   215 a.a.
NCBI ID   WP_015383201.1    Uniprot ID   -
Organism   Bacillus subtilis strain CP35     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3102238..3112885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN65_RS16015 (RFN65_16015) nsrR 3103840..3104280 (+) 441 WP_063334953.1 nitric oxide-sensing transcriptional repressor NsrR -
  RFN65_RS16020 (RFN65_16020) lytF 3104433..3105893 (+) 1461 WP_309529761.1 peptidoglycan endopeptidase LytF -
  RFN65_RS16025 (RFN65_16025) yhdC 3105936..3106259 (-) 324 WP_014476269.1 YqzG/YhdC family protein -
  RFN65_RS16030 (RFN65_16030) yhdB 3106460..3106702 (+) 243 WP_003233373.1 YhdB family protein -
  RFN65_RS16035 (RFN65_16035) yhdA 3106717..3107241 (-) 525 WP_063334951.1 FMN-dependent NADPH-azoreductase -
  RFN65_RS16040 (RFN65_16040) vraR 3107238..3107885 (-) 648 WP_015383201.1 two-component system response regulator YhcZ Regulator
  RFN65_RS16045 (RFN65_16045) yhcY 3107882..3109021 (-) 1140 WP_063334950.1 two-component system sensor histidine kinase YhcY -
  RFN65_RS16050 (RFN65_16050) pgcA 3109170..3110915 (-) 1746 WP_100506257.1 phosphoglucomutase -
  RFN65_RS16055 (RFN65_16055) glpD 3111045..3112712 (-) 1668 WP_015383198.1 glycerol-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24191.86 Da        Isoelectric Point: 6.5033

>NTDB_id=800186 RFN65_RS16040 WP_015383201.1 3107238..3107885(-) (vraR) [Bacillus subtilis strain CP35]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGLEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPETNIIVL
TSYSDQEHVIPALRAGAKAYQLKDTEPEELVKTLRQVHAGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=800186 RFN65_RS16040 WP_015383201.1 3107238..3107885(-) (vraR) [Bacillus subtilis strain CP35]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTTGTCGGAGAAGCTGCAACCGGATTAGAAGCACTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTCCCGGAGACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCGGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGCTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTGA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACAAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCGAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCTGATCGTACGCAAGCAGCGCTTTTCGCAGTGAAATATAACCTGAATGGAGAGATCT
CGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.209

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

38.053

100

0.4