Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   PX690_RS08675 Genome accession   NZ_CP119675
Coordinates   1600975..1602360 (-) Length   461 a.a.
NCBI ID   WP_063174504.1    Uniprot ID   -
Organism   Bacillus velezensis strain 160     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1595975..1607360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PX690_RS08640 (PX690_08640) flgL 1596150..1597067 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  PX690_RS08645 (PX690_08645) flgK 1597079..1598596 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  PX690_RS08650 (PX690_08650) - 1598612..1599094 (-) 483 WP_003151394.1 flagellar protein FlgN -
  PX690_RS08655 (PX690_08655) flgM 1599109..1599375 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  PX690_RS08660 (PX690_08660) - 1599445..1599864 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  PX690_RS08665 (PX690_08665) comFC 1599938..1600627 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  PX690_RS08670 (PX690_08670) - 1600633..1600917 (-) 285 WP_003151389.1 competence protein ComFB -
  PX690_RS08675 (PX690_08675) comFA 1600975..1602360 (-) 1386 WP_063174504.1 DEAD/DEAH box helicase Machinery gene
  PX690_RS08680 (PX690_08680) - 1602468..1603316 (-) 849 WP_014305929.1 DegV family protein -
  PX690_RS08685 (PX690_08685) degU 1603414..1604103 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  PX690_RS08690 (PX690_08690) degS 1604180..1605343 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  PX690_RS08695 (PX690_08695) - 1605566..1606213 (+) 648 WP_003151384.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52457.99 Da        Isoelectric Point: 10.2294

>NTDB_id=800182 PX690_RS08675 WP_063174504.1 1600975..1602360(-) (comFA) [Bacillus velezensis strain 160]
MAEGASEFSEVRDFFYGRHLLRSEIPFSDHCIKRFIEKEHITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENRWKPVKLSWEGTLTDGQKQAAAALTDAIKGRQELLVWAVCGSGKTEMLFPGIEY
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVLFHFGMTNGMKKAKKHIELMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=800182 PX690_RS08675 WP_063174504.1 1600975..1602360(-) (comFA) [Bacillus velezensis strain 160]
ATGGCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATTGCATCAAGCGTTTTATAGAAAAAGAGCATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAGAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
ATGGAAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGGGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTAT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCTGA
CACATTAAAAAAGAATGCTGAAGCAGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACTTATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.043

99.783

0.629