Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   RFN65_RS15675 Genome accession   NZ_CP133703
Coordinates   3039502..3040245 (-) Length   247 a.a.
NCBI ID   WP_309529750.1    Uniprot ID   -
Organism   Bacillus subtilis strain CP35     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3034502..3045245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN65_RS15655 (RFN65_15655) - 3034881..3036272 (+) 1392 WP_309529748.1 hypothetical protein -
  RFN65_RS15660 (RFN65_15660) sndC 3036345..3037535 (+) 1191 WP_309529749.1 N-acetyl amino acid acetylase SndC -
  RFN65_RS15665 (RFN65_15665) ecsC 3037553..3038263 (-) 711 WP_047182363.1 EcsC family protein -
  RFN65_RS15670 (RFN65_15670) ecsB 3038283..3039509 (-) 1227 WP_003245169.1 ABC transporter permease EcsB -
  RFN65_RS15675 (RFN65_15675) pptA 3039502..3040245 (-) 744 WP_309529750.1 ABC transporter ATP-binding protein EcsA Regulator
  RFN65_RS15680 (RFN65_15680) hinT 3040733..3041170 (+) 438 WP_003233231.1 HIT family protein -
  RFN65_RS15685 (RFN65_15685) serC 3041317..3042396 (+) 1080 WP_047182362.1 3-phosphoserine/phosphohydroxythreonine transaminase -
  RFN65_RS15690 (RFN65_15690) trpP 3042521..3043039 (+) 519 WP_100506235.1 tryptophan transporter TrpP -
  RFN65_RS15695 (RFN65_15695) - 3043113..3043304 (-) 192 WP_309529751.1 hypothetical protein -
  RFN65_RS15700 (RFN65_15700) yhaH 3043434..3043790 (+) 357 WP_003245875.1 YtxH domain-containing protein -
  RFN65_RS15705 (RFN65_15705) scoC 3043968..3044579 (+) 612 WP_003239501.1 HTH-type transcriptional regulator Hpr -
  RFN65_RS15710 (RFN65_15710) yhaI 3044576..3044917 (-) 342 WP_009966921.1 YhaI family protein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27726.19 Da        Isoelectric Point: 5.9114

>NTDB_id=800183 RFN65_RS15675 WP_309529750.1 3039502..3040245(-) (pptA) [Bacillus subtilis strain CP35]
MSLLSVKDLTGGYTRNPVLKNVSFTLEPNQIVGLIGLNGAGKSTTIRHIIGLMDPHKGSIELNGKTFAEDTEGYRSQFTY
IPETPVLYEELTLMEHLELTAMAYGLSKETMEKRLPPLLKEFRMEKRLKWFPAHFSKGMKQKVMIMCAFLAEPALYIIDE
PFLGLDPLAINALLERMNEAKKGGASVLMSTHILATAERYCDSFIILHNGEVRARGTLSELREQFGMKDAALDDLYLELT
KEDAGHE

Nucleotide


Download         Length: 744 bp        

>NTDB_id=800183 RFN65_RS15675 WP_309529750.1 3039502..3040245(-) (pptA) [Bacillus subtilis strain CP35]
ATGTCTCTGCTATCGGTAAAAGACTTGACCGGCGGATATACAAGGAATCCGGTTTTAAAAAACGTATCATTCACCCTTGA
ACCGAATCAAATTGTCGGCTTAATCGGGCTGAATGGTGCTGGTAAAAGTACAACAATCAGACACATCATCGGGCTGATGG
ACCCGCATAAAGGTTCAATCGAATTAAACGGTAAAACGTTTGCTGAGGATACGGAAGGCTACCGTTCACAATTTACCTAT
ATACCTGAAACACCTGTTTTATACGAAGAATTGACGCTGATGGAGCATCTTGAACTAACAGCCATGGCATATGGACTGTC
AAAAGAAACGATGGAGAAAAGGCTGCCTCCGCTTTTAAAGGAATTCCGAATGGAAAAGAGGCTGAAGTGGTTCCCGGCCC
ATTTTTCTAAAGGAATGAAGCAGAAGGTTATGATTATGTGCGCATTTTTGGCAGAGCCTGCGCTCTACATTATTGATGAG
CCTTTTCTAGGGCTTGATCCGCTTGCCATTAACGCGCTGCTTGAACGGATGAATGAAGCGAAAAAAGGCGGGGCGAGCGT
GCTGATGTCAACACACATTTTGGCAACGGCAGAACGCTATTGCGATTCGTTTATTATTTTACATAACGGCGAGGTGCGGG
CGCGCGGCACGCTGTCAGAGCTCAGAGAGCAGTTTGGAATGAAGGACGCGGCGCTGGACGATTTGTATCTTGAGCTTACA
AAGGAAGACGCTGGCCATGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

56.485

96.761

0.547
  pptA Streptococcus thermophilus LMD-9

56.067

96.761

0.543