Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   P3K65_RS18500 Genome accession   NZ_CP119629
Coordinates   3629175..3630413 (-) Length   412 a.a.
NCBI ID   WP_000990710.1    Uniprot ID   A0AAX3Q7Y1
Organism   Bacillus paranthracis strain Bc006     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3624175..3635413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3K65_RS18475 (P3K65_18475) spoVS 3624254..3624514 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  P3K65_RS18480 (P3K65_18480) - 3624663..3625457 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  P3K65_RS18485 (P3K65_18485) rny 3625622..3627187 (-) 1566 WP_000099355.1 ribonuclease Y -
  P3K65_RS18490 (P3K65_18490) - 3627673..3628095 (-) 423 Protein_3585 recombinase RecA -
  P3K65_RS18495 (P3K65_18495) recA 3628422..3629030 (-) 609 Protein_3586 recombinase RecA -
  P3K65_RS18500 (P3K65_18500) cinA 3629175..3630413 (-) 1239 WP_000990710.1 competence/damage-inducible protein CinA Machinery gene
  P3K65_RS18505 (P3K65_18505) pgsA 3630434..3631012 (-) 579 WP_001052963.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  P3K65_RS18510 (P3K65_18510) - 3631076..3632002 (-) 927 WP_000137483.1 helix-turn-helix domain-containing protein -
  P3K65_RS18515 (P3K65_18515) - 3632024..3632809 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  P3K65_RS18520 (P3K65_18520) - 3632949..3633197 (-) 249 WP_000114454.1 DUF3243 domain-containing protein -
  P3K65_RS18525 (P3K65_18525) ymfI 3633273..3633986 (-) 714 WP_000759620.1 elongation factor P 5-aminopentanone reductase -
  P3K65_RS18530 (P3K65_18530) yfmH 3634090..3635376 (-) 1287 WP_000411945.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45465.72 Da        Isoelectric Point: 5.2165

>NTDB_id=800129 P3K65_RS18500 WP_000990710.1 3629175..3630413(-) (cinA) [Bacillus paranthracis strain Bc006]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
IASSLAEELVYDEKALASISDYFKRTGREFTENNKKQALVLDGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNAHEAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKKKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LSTDGAVSKECARYLAENVRELLKADIGISFTGVAGPDASEHKEPGTVFVGLAMKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=800129 P3K65_RS18500 WP_000990710.1 3629175..3630413(-) (cinA) [Bacillus paranthracis strain Bc006]
ATGAACGCTGAAATTATTGCGGTTGGAACAGAATTATTACTTGGACAAATTGCAAATACGAACGCCCAGTTTTTGTCTGA
AAAGTTAGCTTCAATTGGAATTAACGTGTACTACCATACTGTAGTTGGTGATAATAACAAGCGACTGCAGCAGGCGATTG
AAGTTGCAGAAGAACGTGCGGATATGCTCATTTTCACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAGGAAACA
ATAGCGTCTAGCTTAGCGGAAGAGCTTGTATATGATGAAAAGGCATTAGCATCAATAAGCGATTACTTTAAGCGAACAGG
TCGAGAGTTCACGGAGAATAATAAAAAGCAGGCGCTCGTTTTGGATGGAGCGACTGTATTTGCAAATGATCATGGTATGG
CACCTGGTATGGGATTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCGAAAGAAATGAAGCCGATGTAT
GTAAGTTATGTGGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTTTTCGGAAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAATCCGACAATCGCCCCGCTTGCCAATG
ATGGAGAAGTGACATTACGTTTAACGGCTAAACATCAAAATGCTCATGAAGCGGAGAAACTCATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTTGGAGAATTTTTCTACGGGTATGACCAAGAGTTTCTACATTATAAGGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCGGAAAGTTTAACAGGTGGTCTCTTTGGTAATCAAGTAACAGAAAACGCTGGTG
TGTCTTCCGTATTTAAAGGCGGTGTCATTTGTTACCATAATGATGTGAAGCAACATGTATTACATGTACCTGAGGAAGTC
TTGTCTACTGACGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAGAGAATTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGACCAGATGCTTCAGAACATAAAGAGCCGGGAACTGTATTTGTTGGATTGGCGA
TGAAAGATGAACCAACTGTAGTCTTTCCTCTAAATTTAAGCGGAAGTCGTCAACAAATTAGGGAACGCTCAGCAAAATAT
GGATTTTATCATTTGTATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Competence-damaged protein (CinA)

(258-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.981

100

0.59
  cinA Streptococcus mitis SK321

47.494

100

0.483
  cinA Streptococcus pneumoniae TIGR4

47.255

100

0.481
  cinA Streptococcus pneumoniae Rx1

46.778

100

0.476
  cinA Streptococcus pneumoniae R6

46.778

100

0.476
  cinA Streptococcus pneumoniae D39

46.539

100

0.473
  cinA Streptococcus mitis NCTC 12261

46.301

100

0.471
  cinA Streptococcus mutans UA159

45.813

98.544

0.451
  cinA Streptococcus suis isolate S10

41.534

91.748

0.381