Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RFN65_RS04215 Genome accession   NZ_CP133703
Coordinates   843521..844156 (+) Length   211 a.a.
NCBI ID   WP_015384608.1    Uniprot ID   -
Organism   Bacillus subtilis strain CP35     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 838521..849156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN65_RS04190 (RFN65_04190) liaI 839648..840028 (+) 381 WP_003243447.1 cell envelope stress-induced membrane anchor protein LiaI -
  RFN65_RS04195 (RFN65_04195) liaH 840055..840732 (+) 678 WP_003228506.1 stress responsive protein LiaH -
  RFN65_RS04200 (RFN65_04200) liaG 840833..841705 (+) 873 WP_063334641.1 DUF4097 domain-containing protein -
  RFN65_RS04205 (RFN65_04205) liaF 841739..842464 (+) 726 WP_100505807.1 LiaRS two-component regulatory system accessory protein LiaF -
  RFN65_RS04210 (RFN65_04210) liaS 842461..843543 (+) 1083 WP_063334640.1 two-component system sensor histidine kinase LiaS -
  RFN65_RS04215 (RFN65_04215) vraR 843521..844156 (+) 636 WP_015384608.1 two-component system response regulator LiaR Regulator
  RFN65_RS04220 (RFN65_04220) gerAC 844164..845285 (-) 1122 WP_015384607.1 spore germination receptor protein GerAC -
  RFN65_RS04225 (RFN65_04225) gerAB 845282..846379 (-) 1098 WP_047183155.1 spore germination receptor protein GerAB -
  RFN65_RS04230 (RFN65_04230) gerAA 846348..847796 (-) 1449 WP_015483677.1 spore germination receptor protein GerAA -
  RFN65_RS04235 (RFN65_04235) yvzF 847914..848099 (+) 186 WP_003221676.1 YvzF family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23096.70 Da        Isoelectric Point: 4.9049

>NTDB_id=800092 RFN65_RS04215 WP_015384608.1 843521..844156(+) (vraR) [Bacillus subtilis strain CP35]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAAELSPDVILMDLVMEGMDGIEATKQICRELSDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENALPHESLTKRELEILCL
IAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVN

Nucleotide


Download         Length: 636 bp        

>NTDB_id=800092 RFN65_RS04215 WP_015384608.1 843521..844156(+) (vraR) [Bacillus subtilis strain CP35]
GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCTCGCGGCTTTTTTGGAGGCGCAGCCCGATAT
TGAAGTCATCGGCGAAGCATCGGACGGCAGCGAAGGTGTTCGGCTTGCTGCGGAACTGTCGCCTGATGTCATTTTAATGG
ATCTTGTCATGGAGGGCATGGATGGCATTGAAGCTACAAAGCAAATTTGCCGGGAGCTTTCCGATCCGAAAATTATTGTG
CTCACTAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTGGCGCGCTCAGCTATCTGTTGAAAACCTCAAA
AGCGGCAGAAATCGCCGATGCCATCCGCGCCGCAAGCAAAGGAGAGCCGAAGCTGGAGTCAAAAGTGGCGGGAAAAGTAT
TATCCAGGCTGCGCCACTCAGGTGAAAACGCGCTCCCGCATGAATCACTTACGAAACGGGAGCTCGAAATACTCTGCCTG
ATCGCAGAAGGAAAGACAAACAAAGAAATAGGCGAGGAACTGTTTATTACGATTAAAACAGTCAAAACACATATTACCAA
TATTTTATCAAAGCTGGATGTCAGTGACCGGACGCAGGCGGCGGTGTACGCACACCGAAATCATCTCGTAAATTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.857

99.526

0.526
  degU Bacillus subtilis subsp. subtilis str. 168

38.565

100

0.408