Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   P1K34_RS01395 Genome accession   NZ_CP119598
Coordinates   266051..267121 (+) Length   356 a.a.
NCBI ID   WP_136274057.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 1042     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 261051..272121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1K34_RS01380 (P1K34_01380) amiA 261579..263549 (+) 1971 WP_136274058.1 peptide ABC transporter substrate-binding protein Regulator
  P1K34_RS01385 (P1K34_01385) amiC 263614..265116 (+) 1503 WP_010921891.1 ABC transporter permease Regulator
  P1K34_RS01390 (P1K34_01390) amiD 265116..266042 (+) 927 WP_010921892.1 oligopeptide ABC transporter permease OppC Regulator
  P1K34_RS01395 (P1K34_01395) amiE 266051..267121 (+) 1071 WP_136274057.1 ABC transporter ATP-binding protein Regulator
  P1K34_RS01400 (P1K34_01400) amiF 267114..268037 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator

Sequence


Protein


Download         Length: 356 a.a.        Molecular weight: 39717.80 Da        Isoelectric Point: 5.6707

>NTDB_id=799998 P1K34_RS01395 WP_136274057.1 266051..267121(+) (amiE) [Streptococcus pyogenes strain 1042]
MTKENNVILTAKDVVVEFDVRDRVLTAIRNVSLELIEGEVLAFVGESGSGKSVLTKTFTGMLESNGRIANGSIVYRGQEL
TDLKTNKEWAKIRGSKIATIFQDPMTSLSPIKTIGSQITEVIIKHQKVSHAKAKEMALDYMNKVGIPNAKKRFEDYPFEY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIVELLKSLQREYHFTIIFITHDLGVVASIADKVAVMYAGEIVE
FGTVEEIFYDPRHPYTWSLLSSLPQLADESGELYAIPGTPPSLYSPIIGDAFALRSEYAMVLDFEKAPPAINVSETHWAK
TWLLHPEAPKVQKPEVIQDLHQKILRKMSQQEEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=799998 P1K34_RS01395 WP_136274057.1 266051..267121(+) (amiE) [Streptococcus pyogenes strain 1042]
ATGACAAAAGAAAATAATGTAATCTTAACTGCCAAAGATGTGGTGGTAGAATTTGATGTGCGTGATCGTGTTTTAACAGC
TATCCGTAACGTCTCACTGGAACTTATTGAAGGAGAAGTCCTTGCTTTTGTAGGGGAATCAGGCTCAGGTAAATCTGTTT
TAACAAAGACCTTTACAGGGATGTTGGAGTCTAATGGACGCATTGCTAATGGTTCAATTGTCTATCGTGGGCAAGAATTG
ACAGATTTAAAAACAAATAAAGAGTGGGCAAAGATTCGCGGCTCAAAAATCGCAACGATTTTCCAAGACCCAATGACCAG
TCTTAGTCCCATTAAAACTATCGGTAGCCAAATCACAGAAGTGATTATTAAGCACCAAAAAGTAAGTCATGCCAAAGCTA
AAGAAATGGCCCTTGATTACATGAATAAAGTGGGTATCCCAAATGCCAAAAAACGCTTTGAAGATTACCCATTTGAGTAT
TCAGGAGGAATGCGTCAACGTATTGTTATCGCTATTGCTTTAGCTTGTCGCCCAGATATTCTTATCTGTGATGAGCCAAC
AACAGCCCTTGATGTGACTATTCAAGCTCAAATCGTTGAGTTATTGAAGTCGCTTCAACGAGAATATCATTTCACCATTA
TCTTTATTACGCACGATTTAGGTGTTGTGGCAAGCATTGCAGATAAAGTGGCTGTCATGTATGCAGGAGAAATTGTTGAA
TTTGGAACAGTCGAAGAGATTTTCTATGATCCAAGACACCCCTATACATGGAGTTTGCTGTCTAGCTTACCGCAGTTGGC
AGATGAATCTGGTGAACTTTACGCTATTCCAGGAACGCCTCCATCACTTTATTCACCAATTATCGGAGATGCCTTTGCAC
TTCGCTCAGAATATGCTATGGTTTTAGACTTTGAAAAAGCACCTCCGGCGATTAACGTATCTGAGACTCATTGGGCCAAA
ACATGGCTTTTACACCCAGAGGCTCCAAAAGTTCAAAAACCAGAAGTCATTCAAGATTTGCATCAAAAAATCTTAAGAAA
AATGTCACAACAGGAGGAAGGAAATGTCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

76.389

100

0.772

  amiE Streptococcus thermophilus LMG 18311

75.278

100

0.761

  amiE Streptococcus thermophilus LMD-9

75.278

100

0.761

  oppD Streptococcus mutans UA159

56.677

94.663

0.537