Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   RGC87_RS04800 Genome accession   NZ_CP133660
Coordinates   913758..914498 (+) Length   246 a.a.
NCBI ID   WP_029160280.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JH4322     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 908758..919498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGC87_RS04775 (RGC87_04775) yhaM 909176..910117 (+) 942 WP_001244175.1 3'-5' exoribonuclease YhaM -
  RGC87_RS04780 (RGC87_04780) - 910238..911200 (-) 963 WP_000782127.1 foldase protein PrsA -
  RGC87_RS04785 (RGC87_04785) - 911405..911962 (-) 558 WP_000477959.1 DUF3267 domain-containing protein -
  RGC87_RS04790 (RGC87_04790) - 912695..913060 (-) 366 WP_000648118.1 YtxH domain-containing protein -
  RGC87_RS04795 (RGC87_04795) - 913202..913624 (-) 423 WP_000004981.1 HIT family protein -
  RGC87_RS04800 (RGC87_04800) pptA 913758..914498 (+) 741 WP_029160280.1 ABC transporter ATP-binding protein EcsA Regulator
  RGC87_RS04805 (RGC87_04805) ecsB 914491..915714 (+) 1224 WP_000551840.1 ABC transporter permease EcsB -
  RGC87_RS04810 (RGC87_04810) traP 915838..916341 (-) 504 WP_000737976.1 signal transduction protein TRAP -
  RGC87_RS04815 (RGC87_04815) - 916504..916614 (+) 111 WP_001790154.1 hypothetical protein -
  RGC87_RS04820 (RGC87_04820) hemE 916604..917641 (+) 1038 WP_000233526.1 uroporphyrinogen decarboxylase -
  RGC87_RS04825 (RGC87_04825) hemH 917699..918622 (+) 924 WP_000162881.1 ferrochelatase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27735.10 Da        Isoelectric Point: 4.7455

>NTDB_id=799997 RGC87_RS04800 WP_029160280.1 913758..914498(+) (pptA) [Staphylococcus aureus strain JH4322]
MTVKVEQFTGGYGKRPVIKDINFELNKGEIVGLIGLNGAGKSTTIKHMLGLLTPMEGSLSISDININDDIEAYRRKLSYI
PESPVIYEELTLEEHIEMTAMAYDIDRDEAMNRAMPLLKTFRLENELKVFPSHFSKGMKQKVMIICAFIVNPELYIIDEP
FLGLDPLGIQSMLDLMVEKKNEGRTVLMSTHILATAERYCDRFIILDEGEVVAFGDLEALRQQTGLHKQTLDDIYIHVTQ
GGDVHA

Nucleotide


Download         Length: 741 bp        

>NTDB_id=799997 RGC87_RS04800 WP_029160280.1 913758..914498(+) (pptA) [Staphylococcus aureus strain JH4322]
ATGACAGTTAAAGTAGAACAGTTTACAGGTGGATATGGAAAACGCCCTGTAATTAAAGATATAAATTTTGAATTAAACAA
AGGCGAAATTGTTGGACTTATTGGCCTTAATGGCGCTGGTAAGAGTACAACGATTAAACATATGCTAGGATTGCTTACAC
CTATGGAAGGATCTCTATCAATTTCAGATATCAACATTAATGATGACATAGAGGCTTATAGAAGAAAGTTATCTTATATT
CCGGAATCACCGGTTATTTATGAAGAACTCACATTAGAGGAACACATTGAGATGACAGCAATGGCATATGATATTGATCG
TGATGAAGCGATGAATCGAGCAATGCCATTATTAAAGACATTCCGTTTAGAAAATGAATTGAAAGTTTTTCCGAGTCATT
TTTCTAAGGGGATGAAACAAAAAGTCATGATTATTTGTGCGTTTATCGTTAATCCCGAATTGTATATTATAGACGAACCA
TTCCTTGGCCTAGATCCATTAGGAATTCAATCCATGTTAGATTTAATGGTTGAAAAGAAAAACGAAGGTAGAACCGTTCT
AATGAGTACACATATTTTAGCAACAGCTGAACGTTATTGTGATCGTTTTATCATACTAGACGAAGGTGAAGTCGTTGCAT
TTGGAGATTTAGAAGCATTGAGACAACAAACTGGCTTACATAAACAAACATTAGACGATATATATATTCATGTGACGCAA
GGTGGAGATGTACATGCATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.322

97.154

0.557
  pptA Streptococcus thermophilus LMD-9

56.067

97.154

0.545