Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | P1289_RS13110 | Genome accession | NZ_CP119589 |
| Coordinates | 2766994..2767968 (+) | Length | 324 a.a. |
| NCBI ID | WP_069794318.1 | Uniprot ID | - |
| Organism | Staphylococcus xylosus strain H-1 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2761994..2772968
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P1289_RS13075 (P1289_13050) | rpmG | 2762102..2762251 (+) | 150 | WP_002483181.1 | 50S ribosomal protein L33 | - |
| P1289_RS13080 (P1289_13055) | - | 2762382..2762924 (+) | 543 | WP_069794316.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| P1289_RS13085 (P1289_13060) | - | 2762936..2764393 (+) | 1458 | WP_069794317.1 | rhomboid family intramembrane serine protease | - |
| P1289_RS13090 (P1289_13065) | - | 2764377..2764571 (+) | 195 | WP_042363548.1 | YqgQ family protein | - |
| P1289_RS13095 (P1289_13070) | - | 2764961..2765947 (+) | 987 | WP_029377187.1 | glucokinase | - |
| P1289_RS13100 (P1289_13075) | - | 2765947..2766270 (+) | 324 | WP_042362616.1 | MTH1187 family thiamine-binding protein | - |
| P1289_RS13105 (P1289_13080) | - | 2766272..2766895 (+) | 624 | WP_042362617.1 | MBL fold metallo-hydrolase | - |
| P1289_RS13110 (P1289_13085) | comGA | 2766994..2767968 (+) | 975 | WP_069794318.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| P1289_RS13115 | - | 2767940..2768287 (+) | 348 | WP_318651801.1 | hypothetical protein | - |
| P1289_RS13120 (P1289_13090) | comGB | 2768300..2769007 (+) | 708 | Protein_2535 | competence type IV pilus assembly protein ComGB | - |
| P1289_RS13125 (P1289_13095) | comGC | 2769027..2769344 (+) | 318 | WP_225523057.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| P1289_RS13130 (P1289_13100) | comGD | 2769322..2769768 (+) | 447 | WP_225526499.1 | competence type IV pilus minor pilin ComGD | - |
| P1289_RS13135 (P1289_13105) | - | 2769755..2770054 (+) | 300 | WP_069794320.1 | hypothetical protein | - |
| P1289_RS13140 (P1289_13110) | comGF | 2770026..2770469 (+) | 444 | WP_069794321.1 | competence type IV pilus minor pilin ComGF | - |
| P1289_RS13145 (P1289_13115) | - | 2770628..2771149 (+) | 522 | WP_047172318.1 | shikimate kinase | - |
| P1289_RS13150 (P1289_13120) | gcvT | 2771337..2772428 (+) | 1092 | WP_042362624.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37202.42 Da Isoelectric Point: 9.3721
>NTDB_id=799839 P1289_RS13110 WP_069794318.1 2766994..2767968(+) (comGA) [Staphylococcus xylosus strain H-1]
MKLLFNSMIEKAINNDASDIHFIPADKEVMIKFRIRDDLKSIETLQLNTYLKLLTYMKYQAGLDVSKHNAAQSGRYIYKL
KQIYFLRISTLPLSLGHESCVIRIIPQYFQKHKNNQNITHLYNLMNKKQGLILLSGPTGSGKSTLMYHMLSYAKENLNLN
IITIEEPVEQLINGITQISLNEKAGINYETSFKAILRCDPDIILIGEIRDANVAKHVIQASLSGHLVLSTIHASNCKGVI
LRLLEMGITVQQLIQSITSILNQRLITNIKGERELVYEQITKEDIYHFFKNSYTLPKDFHNLSYKLNKMSKEGMICETSM
ERYL
MKLLFNSMIEKAINNDASDIHFIPADKEVMIKFRIRDDLKSIETLQLNTYLKLLTYMKYQAGLDVSKHNAAQSGRYIYKL
KQIYFLRISTLPLSLGHESCVIRIIPQYFQKHKNNQNITHLYNLMNKKQGLILLSGPTGSGKSTLMYHMLSYAKENLNLN
IITIEEPVEQLINGITQISLNEKAGINYETSFKAILRCDPDIILIGEIRDANVAKHVIQASLSGHLVLSTIHASNCKGVI
LRLLEMGITVQQLIQSITSILNQRLITNIKGERELVYEQITKEDIYHFFKNSYTLPKDFHNLSYKLNKMSKEGMICETSM
ERYL
Nucleotide
Download Length: 975 bp
>NTDB_id=799839 P1289_RS13110 WP_069794318.1 2766994..2767968(+) (comGA) [Staphylococcus xylosus strain H-1]
TTGAAGCTATTGTTTAATAGTATGATTGAAAAGGCAATTAATAATGATGCATCAGATATTCATTTTATCCCCGCAGATAA
AGAAGTAATGATTAAATTTAGAATACGTGATGATTTGAAGTCTATAGAAACATTGCAATTAAATACGTATTTAAAATTAT
TAACCTATATGAAATACCAAGCTGGATTAGATGTCTCTAAACACAATGCTGCACAGAGTGGTAGATATATTTATAAATTA
AAACAAATTTACTTCCTTAGAATATCAACGCTTCCTTTATCTCTAGGACATGAAAGCTGTGTTATTAGGATTATTCCGCA
ATATTTTCAAAAGCATAAAAATAATCAGAACATAACGCATTTATATAATCTAATGAATAAAAAACAAGGATTAATTTTAT
TGAGTGGACCTACTGGCTCTGGAAAAAGTACGTTAATGTATCACATGTTATCTTATGCTAAAGAGAACTTAAATTTAAAT
ATAATTACAATTGAAGAGCCCGTTGAACAATTAATAAATGGCATAACTCAAATATCATTAAATGAAAAGGCAGGGATAAA
TTATGAAACTTCTTTTAAAGCTATTTTACGCTGCGATCCTGATATTATCTTGATTGGAGAAATAAGAGATGCAAACGTAG
CTAAACATGTTATACAAGCCAGTTTAAGTGGTCATTTAGTACTTTCGACAATTCATGCTAGTAATTGCAAAGGAGTTATC
TTAAGACTGCTAGAAATGGGGATAACGGTTCAACAACTCATACAATCAATTACTAGCATATTAAATCAAAGGCTTATTAC
TAACATAAAAGGTGAAAGAGAGCTTGTATATGAACAGATAACTAAAGAAGATATTTATCACTTCTTTAAAAATAGCTATA
CATTACCCAAAGATTTTCATAACTTATCTTATAAACTAAATAAAATGTCAAAAGAGGGGATGATATGTGAAACATCAATG
GAACGTTATCTCTAA
TTGAAGCTATTGTTTAATAGTATGATTGAAAAGGCAATTAATAATGATGCATCAGATATTCATTTTATCCCCGCAGATAA
AGAAGTAATGATTAAATTTAGAATACGTGATGATTTGAAGTCTATAGAAACATTGCAATTAAATACGTATTTAAAATTAT
TAACCTATATGAAATACCAAGCTGGATTAGATGTCTCTAAACACAATGCTGCACAGAGTGGTAGATATATTTATAAATTA
AAACAAATTTACTTCCTTAGAATATCAACGCTTCCTTTATCTCTAGGACATGAAAGCTGTGTTATTAGGATTATTCCGCA
ATATTTTCAAAAGCATAAAAATAATCAGAACATAACGCATTTATATAATCTAATGAATAAAAAACAAGGATTAATTTTAT
TGAGTGGACCTACTGGCTCTGGAAAAAGTACGTTAATGTATCACATGTTATCTTATGCTAAAGAGAACTTAAATTTAAAT
ATAATTACAATTGAAGAGCCCGTTGAACAATTAATAAATGGCATAACTCAAATATCATTAAATGAAAAGGCAGGGATAAA
TTATGAAACTTCTTTTAAAGCTATTTTACGCTGCGATCCTGATATTATCTTGATTGGAGAAATAAGAGATGCAAACGTAG
CTAAACATGTTATACAAGCCAGTTTAAGTGGTCATTTAGTACTTTCGACAATTCATGCTAGTAATTGCAAAGGAGTTATC
TTAAGACTGCTAGAAATGGGGATAACGGTTCAACAACTCATACAATCAATTACTAGCATATTAAATCAAAGGCTTATTAC
TAACATAAAAGGTGAAAGAGAGCTTGTATATGAACAGATAACTAAAGAAGATATTTATCACTTCTTTAAAAATAGCTATA
CATTACCCAAAGATTTTCATAACTTATCTTATAAACTAAATAAAATGTCAAAAGAGGGGATGATATGTGAAACATCAATG
GAACGTTATCTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
62.963 |
100 |
0.63 |
| comGA | Staphylococcus aureus N315 |
62.963 |
100 |
0.63 |