Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P1289_RS10820 Genome accession   NZ_CP119589
Coordinates   2319192..2319611 (+) Length   139 a.a.
NCBI ID   WP_225523021.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain H-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2314192..2324611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1289_RS10790 (P1289_10760) atpD 2314233..2315645 (+) 1413 WP_042362320.1 F0F1 ATP synthase subunit beta -
  P1289_RS10795 (P1289_10765) - 2315665..2316069 (+) 405 WP_017722095.1 F0F1 ATP synthase subunit epsilon -
  P1289_RS10800 (P1289_10770) - 2316411..2316644 (+) 234 WP_042362321.1 DUF1146 family protein -
  P1289_RS10805 (P1289_10775) murA 2316751..2318016 (+) 1266 WP_042362322.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  P1289_RS10810 (P1289_10780) fabZ 2318074..2318511 (+) 438 WP_029377977.1 3-hydroxyacyl-ACP dehydratase FabZ -
  P1289_RS10815 (P1289_10785) - 2318561..2319001 (-) 441 WP_017722099.1 YwpF-like family protein -
  P1289_RS10820 (P1289_10790) ssb 2319192..2319611 (+) 420 WP_225523021.1 single-stranded DNA-binding protein Machinery gene
  P1289_RS10825 (P1289_10795) - 2320038..2320733 (+) 696 WP_042362324.1 transglycosylase family protein -
  P1289_RS10830 (P1289_10800) tenA 2321173..2321853 (+) 681 WP_042362325.1 thiaminase II -
  P1289_RS10835 (P1289_10805) thiD 2321855..2322676 (+) 822 WP_225523022.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  P1289_RS10840 (P1289_10810) thiM 2322669..2323457 (+) 789 WP_069793844.1 hydroxyethylthiazole kinase -
  P1289_RS10845 (P1289_10815) thiE 2323460..2324098 (+) 639 WP_047172093.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 16236.67 Da        Isoelectric Point: 6.4617

>NTDB_id=799827 P1289_RS10820 WP_225523021.1 2319192..2319611(+) (ssb) [Staphylococcus xylosus strain H-1]
MINNIVIVGRLTKDPKIYEKEGNKLATMCVAITRNYKDKDQNFICDYLYCKAVGKIANNIELYLNKGSLVGITGQMQSRK
YEKEGQMHFVSELFIETIRFMSPRNKDEVNEFHEIFPIEQVCNSNKEKNLQDNEIYEIV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=799827 P1289_RS10820 WP_225523021.1 2319192..2319611(+) (ssb) [Staphylococcus xylosus strain H-1]
ATGATTAACAACATTGTCATAGTAGGGAGATTAACAAAAGACCCTAAAATTTATGAAAAGGAGGGGAATAAATTAGCTAC
AATGTGTGTAGCGATAACAAGAAATTATAAAGATAAGGATCAAAATTTTATTTGTGATTATCTCTATTGTAAGGCAGTTG
GTAAAATAGCTAATAATATCGAACTATATTTAAATAAAGGATCACTTGTGGGCATCACTGGACAAATGCAATCACGAAAA
TATGAAAAAGAAGGGCAGATGCATTTTGTATCGGAACTTTTTATTGAAACGATTAGATTTATGTCTCCGAGAAACAAAGA
TGAAGTTAACGAATTTCATGAAATATTCCCTATAGAGCAAGTTTGTAATTCTAATAAAGAAAAAAATTTACAAGATAATG
AAATATATGAAATTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

65.421

76.978

0.504
  ssb Staphylococcus aureus MW2

64.486

76.978

0.496