Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   P1289_RS02475 Genome accession   NZ_CP119589
Coordinates   532105..532668 (-) Length   187 a.a.
NCBI ID   WP_225523116.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain H-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 527105..537668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1289_RS02450 (P1289_02445) - 527663..528223 (-) 561 WP_069793882.1 SH3 domain-containing protein -
  P1289_RS02455 (P1289_02450) - 528222..530135 (-) 1914 Protein_488 tape measure protein -
  P1289_RS02460 (P1289_02455) - 530550..531611 (+) 1062 WP_225523115.1 site-specific integrase -
  P1289_RS02475 (P1289_02470) comK/comK1 532105..532668 (-) 564 WP_225523116.1 competence protein ComK Regulator
  P1289_RS02480 (P1289_02475) - 532921..533139 (+) 219 WP_029379123.1 IDEAL domain-containing protein -
  P1289_RS02485 (P1289_02480) - 533239..534225 (-) 987 WP_042362968.1 lipoate--protein ligase -
  P1289_RS02490 (P1289_02485) - 534425..534610 (+) 186 WP_002483735.1 DUF2187 family protein -
  P1289_RS02495 (P1289_02490) - 534616..535218 (+) 603 WP_029379125.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  P1289_RS02500 (P1289_02495) - 535285..536793 (-) 1509 WP_069793885.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 21883.22 Da        Isoelectric Point: 9.5361

>NTDB_id=799814 P1289_RS02475 WP_225523116.1 532105..532668(-) (comK/comK1) [Staphylococcus xylosus strain H-1]
MIQPYIIKKGDMVLQPCNLATGQYEGSYLLRYKADSQIIKERVSKIIDRSCRFYGSSYVFKKEDTMRITGISSKPPILFT
PLFPTYFFPTHSDRKADNTWINIHYVHNIRPLKEKKCKVTFVDNQSIVANISAHSMHHQYLNGIYYYYMMDRAARVATFD
TDSPIDYTKPQLNIYEALAKYSLFESK

Nucleotide


Download         Length: 564 bp        

>NTDB_id=799814 P1289_RS02475 WP_225523116.1 532105..532668(-) (comK/comK1) [Staphylococcus xylosus strain H-1]
ATGATTCAACCATATATTATTAAAAAAGGTGATATGGTTTTACAACCATGCAATTTAGCTACTGGGCAATATGAAGGTAG
TTACTTGCTAAGGTATAAAGCCGACAGTCAAATTATTAAAGAACGAGTATCTAAAATCATCGACCGTTCATGTAGGTTTT
ATGGTAGCAGTTATGTATTTAAAAAAGAAGATACCATGCGTATTACAGGTATAAGCAGTAAGCCACCCATTCTATTCACT
CCATTATTTCCCACTTATTTCTTTCCCACACACTCTGATCGTAAAGCAGATAATACCTGGATTAATATTCATTATGTACA
TAATATTAGGCCACTTAAAGAAAAGAAATGTAAGGTTACTTTTGTAGATAATCAAAGTATTGTAGCTAACATTTCTGCTC
ATAGTATGCATCATCAATATTTAAATGGTATATACTATTATTACATGATGGATAGGGCAGCAAGAGTCGCTACATTTGAT
ACTGATTCGCCGATTGATTATACTAAACCACAATTAAATATATATGAAGCATTGGCTAAATATTCGTTGTTTGAATCGAA
ATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

55.191

97.861

0.54
  comK/comK1 Staphylococcus aureus N315

55.191

97.861

0.54