Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   RFN60_RS08085 Genome accession   NZ_CP133653
Coordinates   1545283..1546308 (+) Length   341 a.a.
NCBI ID   WP_015252148.1    Uniprot ID   -
Organism   Bacillus subtilis strain CP38     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1540283..1551308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN60_RS08050 (RFN60_08050) ylbE 1540583..1540822 (+) 240 WP_003232231.1 YlbE-like family protein -
  RFN60_RS08055 (RFN60_08055) ylbF 1540938..1541387 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  RFN60_RS08060 (RFN60_08060) ylbG 1541442..1541714 (+) 273 WP_015715839.1 YlbG family protein -
  RFN60_RS08065 (RFN60_08065) rsmD 1542037..1542591 (+) 555 WP_029317761.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  RFN60_RS08070 (RFN60_08070) coaD 1542596..1543081 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  RFN60_RS08075 (RFN60_08075) spoVV 1543092..1544318 (-) 1227 WP_046664166.1 dipicolinic acid transporter SpoVV -
  RFN60_RS08080 (RFN60_08080) ylbK 1544499..1545281 (+) 783 WP_021479345.1 patatin family protein -
  RFN60_RS08085 (RFN60_08085) sepM 1545283..1546308 (+) 1026 WP_015252148.1 protease DdcP Regulator
  RFN60_RS08090 (RFN60_08090) tmcAL 1546325..1547572 (-) 1248 WP_015252147.1 nucleotidyltransferase -
  RFN60_RS08095 (RFN60_08095) - 1547569..1547754 (-) 186 WP_003232215.1 hypothetical protein -
  RFN60_RS08100 (RFN60_08100) ylbN 1547782..1548300 (+) 519 WP_014479718.1 DUF177 domain-containing protein -
  RFN60_RS08105 (RFN60_08105) rpmF 1548322..1548501 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  RFN60_RS08110 (RFN60_08110) gerR 1548647..1549228 (+) 582 WP_044052536.1 sporulation specific transcriptional regulator GerR -
  RFN60_RS08115 (RFN60_08115) ylbP 1549285..1549767 (-) 483 WP_014476736.1 N-acetyltransferase -
  RFN60_RS08120 (RFN60_08120) panEA 1549927..1550823 (+) 897 WP_015252144.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37685.25 Da        Isoelectric Point: 6.5347

>NTDB_id=799808 RFN60_RS08085 WP_015252148.1 1545283..1546308(+) (sepM) [Bacillus subtilis strain CP38]
MLRKKHFSWMVVILILIAFLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=799808 RFN60_RS08085 WP_015252148.1 1545283..1546308(+) (sepM) [Bacillus subtilis strain CP38]
TTGCTACGTAAAAAACATTTTAGCTGGATGGTCGTCATCCTCATACTGATCGCCTTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGTC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CAGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGAAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Peptidase family M50 (Peptidase_M50)

(36-220)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

38.857

100

0.399