Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   RFN60_RS08055 Genome accession   NZ_CP133653
Coordinates   1540938..1541387 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain CP38     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1535938..1546387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN60_RS08015 (RFN60_08015) ctaE 1535954..1536577 (+) 624 WP_015715836.1 cytochrome c oxidase subunit III -
  RFN60_RS08020 (RFN60_08020) ctaF 1536580..1536912 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  RFN60_RS08025 (RFN60_08025) ctaG 1536940..1537833 (+) 894 WP_046664162.1 cytochrome c oxidase assembly factor CtaG -
  RFN60_RS08030 (RFN60_08030) ylbA 1537865..1538227 (-) 363 WP_003232238.1 YugN family protein -
  RFN60_RS08035 (RFN60_08035) ylbB 1538367..1538813 (+) 447 WP_003221362.1 CBS domain-containing protein -
  RFN60_RS08040 (RFN60_08040) ylbC 1538897..1539937 (+) 1041 WP_014479713.1 CAP domain-containing protein -
  RFN60_RS08045 (RFN60_08045) ylbD 1540169..1540567 (+) 399 WP_003232233.1 YlbD family protein -
  RFN60_RS08050 (RFN60_08050) ylbE 1540583..1540822 (+) 240 WP_003232231.1 YlbE-like family protein -
  RFN60_RS08055 (RFN60_08055) ylbF 1540938..1541387 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  RFN60_RS08060 (RFN60_08060) ylbG 1541442..1541714 (+) 273 WP_015715839.1 YlbG family protein -
  RFN60_RS08065 (RFN60_08065) rsmD 1542037..1542591 (+) 555 WP_029317761.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  RFN60_RS08070 (RFN60_08070) coaD 1542596..1543081 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  RFN60_RS08075 (RFN60_08075) spoVV 1543092..1544318 (-) 1227 WP_046664166.1 dipicolinic acid transporter SpoVV -
  RFN60_RS08080 (RFN60_08080) ylbK 1544499..1545281 (+) 783 WP_021479345.1 patatin family protein -
  RFN60_RS08085 (RFN60_08085) sepM 1545283..1546308 (+) 1026 WP_015252148.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=799807 RFN60_RS08055 WP_003221370.1 1540938..1541387(+) (ylbF) [Bacillus subtilis strain CP38]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=799807 RFN60_RS08055 WP_003221370.1 1540938..1541387(+) (ylbF) [Bacillus subtilis strain CP38]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGTTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1