Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RDV59_RS08425 Genome accession   NZ_CP133476
Coordinates   1819210..1819854 (-) Length   214 a.a.
NCBI ID   WP_022496266.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LMG 11489     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1814210..1824854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS08400 (RDV59_08400) - 1816288..1817286 (-) 999 WP_002886866.1 NAD(P)/FAD-dependent oxidoreductase -
  RDV59_RS08405 (RDV59_08405) trmD 1817288..1818007 (-) 720 WP_002886864.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RDV59_RS08410 (RDV59_08410) rimM 1817997..1818515 (-) 519 WP_002884411.1 ribosome maturation factor RimM -
  RDV59_RS08425 (RDV59_08425) vraR 1819210..1819854 (-) 645 WP_022496266.1 response regulator transcription factor Regulator
  RDV59_RS08430 (RDV59_08430) - 1819844..1820854 (-) 1011 WP_038676486.1 sensor histidine kinase -
  RDV59_RS08435 (RDV59_08435) liaF 1820851..1821549 (-) 699 WP_038676488.1 cell wall-active antibiotics response protein LiaF -
  RDV59_RS08440 (RDV59_08440) - 1821713..1822471 (-) 759 WP_038676489.1 potassium channel family protein -
  RDV59_RS08445 (RDV59_08445) stkP/pknB 1822619..1824493 (-) 1875 WP_038676492.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23991.33 Da        Isoelectric Point: 4.5814

>NTDB_id=799717 RDV59_RS08425 WP_022496266.1 1819210..1819854(-) (vraR) [Streptococcus salivarius strain LMG 11489]
MSNKINVILVDDHEMVRLGLKSFLNLQGDIEVVGEAGNGREGVDLALELRPDVVVMDLVMPELDGVQATLELLKEWPEAK
ILVLTSYLDNEKIYPVIEAGAKGYMLKTSSAAEILNSIRKVYRGEEAIETEVDNKIKYHDSHPDLHDDLTARERDILALL
AKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLVSQDDE

Nucleotide


Download         Length: 645 bp        

>NTDB_id=799717 RDV59_RS08425 WP_022496266.1 1819210..1819854(-) (vraR) [Streptococcus salivarius strain LMG 11489]
ATGTCGAATAAGATTAATGTGATTTTGGTCGATGACCATGAGATGGTCCGTTTGGGCCTTAAGAGTTTCTTGAATCTCCA
AGGAGATATAGAAGTAGTTGGAGAGGCAGGGAATGGTCGAGAGGGTGTCGATCTTGCCTTGGAACTGCGTCCGGATGTCG
TCGTTATGGATCTTGTCATGCCTGAATTAGATGGTGTTCAAGCGACTTTGGAATTGCTCAAAGAATGGCCGGAAGCCAAG
ATTTTGGTTTTGACTAGCTATTTGGACAATGAAAAAATTTACCCAGTCATTGAAGCTGGTGCTAAAGGCTATATGCTTAA
AACTAGTAGTGCGGCAGAGATTCTCAATAGTATCCGTAAGGTTTACCGTGGTGAAGAAGCTATCGAAACTGAGGTGGACA
ATAAGATTAAATACCATGATAGTCATCCGGACTTACACGATGACTTGACGGCACGTGAACGTGATATCTTGGCCCTTTTG
GCTAAGGGGTATGACAATCAAACCATTGCTAATGAGCTATTTATTTCGTTGAAAACCGTTAAAACTCACGTGTCTAATAT
CCTTGGAAAACTCAATGTTGATGACCGTACTCAGGCTGTTGTTTATGCCTTTAGACATCATTTGGTTTCGCAGGATGATG
AATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-203)

Response regulator receiver domain (Response_reg)

(7-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

50.971

96.262

0.491
  degU Bacillus subtilis subsp. subtilis str. 168

36.161

100

0.379