Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   RDV59_RS07660 Genome accession   NZ_CP133476
Coordinates   1559346..1560026 (-) Length   226 a.a.
NCBI ID   WP_004182305.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LMG 11489     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1554346..1565026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS07640 (RDV59_07640) - 1554898..1555392 (-) 495 WP_004182309.1 YkgJ family cysteine cluster protein -
  RDV59_RS07645 (RDV59_07645) - 1555477..1557477 (-) 2001 WP_038676280.1 ABC transporter permease -
  RDV59_RS07650 (RDV59_07650) - 1557479..1558237 (-) 759 WP_038676282.1 ABC transporter ATP-binding protein -
  RDV59_RS07655 (RDV59_07655) - 1558382..1559356 (-) 975 WP_038676285.1 sensor histidine kinase -
  RDV59_RS07660 (RDV59_07660) braR 1559346..1560026 (-) 681 WP_004182305.1 response regulator transcription factor Regulator
  RDV59_RS07665 (RDV59_07665) - 1560476..1561057 (+) 582 WP_014634692.1 xanthine phosphoribosyltransferase -
  RDV59_RS07670 (RDV59_07670) - 1561057..1562325 (+) 1269 WP_038676287.1 nucleobase:cation symporter-2 family protein -
  RDV59_RS07675 (RDV59_07675) - 1562448..1564016 (-) 1569 WP_052124403.1 ABC transporter ATP-binding protein -
  RDV59_RS07680 (RDV59_07680) - 1564147..1564980 (+) 834 WP_038676289.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 26073.42 Da        Isoelectric Point: 4.9992

>NTDB_id=799713 RDV59_RS07660 WP_004182305.1 1559346..1560026(-) (braR) [Streptococcus salivarius strain LMG 11489]
MHKILLVEDDEVIRQQVKKMLEQWGYEVVLVEDFMEVLSIFVKVEPHLVLMDIGLPLFNGYHWCQEIRKVSKVPIMFLSS
RDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYEFGKDQSLLEYMGVILNLKAMDLVYQGEVVSLTKNEFQIL
QVLFDHAGNIVSREDLMKELWNSDFFIDDNTLSVNVARLRKKLEAVGLKDFIETKKGVGYGLRHDG

Nucleotide


Download         Length: 681 bp        

>NTDB_id=799713 RDV59_RS07660 WP_004182305.1 1559346..1560026(-) (braR) [Streptococcus salivarius strain LMG 11489]
ATGCATAAGATTTTATTAGTGGAGGACGACGAGGTTATCCGTCAACAAGTCAAAAAAATGCTAGAACAGTGGGGTTACGA
AGTTGTTCTTGTTGAAGATTTCATGGAAGTATTATCTATTTTTGTAAAAGTAGAGCCCCACTTGGTTCTTATGGATATTG
GTTTACCTCTATTCAACGGTTATCATTGGTGTCAGGAAATTCGTAAGGTCTCCAAGGTGCCTATTATGTTCTTGTCTTCC
AGAGATCAGGCCATGGATATTGTTATGGCAATCAACATGGGTGGGGACGACTTTGTGACTAAACCTTTTGACCAAAATGT
TCTCCTAGCAAAAATTCAAGGGCTTTTGCGTCGTTCTTATGAGTTTGGTAAGGATCAGAGTCTCTTGGAATATATGGGTG
TGATTCTGAACCTTAAGGCCATGGATTTGGTTTATCAGGGAGAGGTCGTTTCTTTGACAAAGAATGAGTTTCAGATTTTA
CAAGTTCTCTTCGATCATGCTGGAAATATCGTTAGTCGGGAAGACCTGATGAAGGAGCTTTGGAACAGTGACTTCTTTAT
TGATGATAATACCTTGTCTGTAAATGTAGCTCGTTTACGTAAGAAGTTAGAGGCAGTGGGCTTGAAGGATTTTATTGAAA
CCAAGAAAGGTGTTGGCTACGGGTTGCGTCATGATGGGTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-221)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

52.294

96.46

0.504
  micA Streptococcus pneumoniae Cp1015

35.043

100

0.363