Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   RDV59_RS07460 Genome accession   NZ_CP133476
Coordinates   1518191..1519975 (-) Length   594 a.a.
NCBI ID   WP_038676225.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LMG 11489     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1513191..1524975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS07445 (RDV59_07445) cls 1513782..1515332 (-) 1551 WP_171963658.1 cardiolipin synthase -
  RDV59_RS07450 (RDV59_07450) - 1515925..1517475 (+) 1551 WP_002885312.1 BCCT family transporter -
  RDV59_RS07455 (RDV59_07455) - 1517649..1518047 (+) 399 Protein_1425 transposase family protein -
  RDV59_RS07460 (RDV59_07460) uvrC 1518191..1519975 (-) 1785 WP_038676225.1 excinuclease ABC subunit UvrC Machinery gene
  RDV59_RS07465 (RDV59_07465) - 1520047..1520742 (-) 696 WP_037600698.1 YjjG family noncanonical pyrimidine nucleotidase -
  RDV59_RS07470 (RDV59_07470) sdaAB 1521019..1521690 (+) 672 WP_002885347.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  RDV59_RS07475 (RDV59_07475) sdaAA 1521703..1522572 (+) 870 WP_014634647.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -

Sequence

Protein


Download         Length: 594 a.a.        Molecular weight: 68662.11 Da        Isoelectric Point: 9.4478

>NTDB_id=799712 RDV59_RS07460 WP_038676225.1 1518191..1519975(-) (uvrC) [Streptococcus salivarius strain LMG 11489]
MNNLIKHKLELLPNNPGCYLHKDKFGNIIYVGKAKNLKNRVRSYFRGSHDTKTELLVSEIADFEFIVTESNIEALLLEIN
LIQENMPKFNIRLKDDKSYPFIKITKELYPRLLITRQVKKDGGLYFGPYPDSGAANEIKKLLDRIFPFKKCKNPANKVCF
YYHIGQCNAHTICHTTEDYWQGLVEDVKNFLNGHDDKIVNQLKAKMKDMSDQMEFERAAEYRDLIEAVSTLRTKQRVIRQ
DMQDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDAEEDFLTYMGQFYLDSRHLKPKEIFIPGDIDQESVEAL
VGDEVKVFKPQRGEKKQLVNLATKNARVSLTQKFDLLEKDLAKTQGAIENLGKLMGIPTPVRIESFDNSNIMGTSPVSAM
VVFENGKPNKKEYRKYKIKTVEGPDDYASMREVIRRRYSRVKRDGLTPPDLIIMDGGQGQVNVAKDVLRKELNLSIPVAG
LQKNDKHQTNELLFGDPLRVIDLPRQSEEFFLLHRIQDEVHRFAITFHRQVRSKNSFSSKLDGVEGLGPKRKQKLLKYFK
SMTAIQKATVEDIHALGIPEKVAEALLDKLNDNN

Nucleotide


Download         Length: 1785 bp        

>NTDB_id=799712 RDV59_RS07460 WP_038676225.1 1518191..1519975(-) (uvrC) [Streptococcus salivarius strain LMG 11489]
ATGAATAATCTGATTAAACATAAGCTGGAATTGCTCCCAAACAACCCGGGGTGCTATCTCCACAAGGACAAATTCGGCAA
TATTATCTATGTCGGTAAGGCTAAAAATCTAAAAAATCGTGTGCGTAGCTATTTTCGTGGAAGTCATGATACTAAGACGG
AGCTTTTGGTATCTGAGATTGCAGACTTTGAATTTATCGTAACCGAGTCCAATATTGAGGCCCTGCTTTTGGAAATTAAT
CTTATCCAAGAGAATATGCCTAAATTCAACATCCGCCTCAAGGATGACAAGTCTTATCCATTTATCAAGATTACTAAGGA
GCTCTATCCAAGGCTCTTGATTACCCGCCAGGTTAAGAAGGATGGCGGTCTCTATTTTGGTCCTTACCCAGACTCTGGTG
CGGCCAATGAAATCAAGAAGCTTTTGGACCGTATTTTCCCCTTTAAGAAATGTAAAAATCCGGCCAATAAGGTCTGTTTC
TATTACCATATTGGCCAATGTAATGCCCACACCATCTGTCACACCACTGAGGACTATTGGCAAGGTTTGGTTGAAGATGT
CAAGAATTTCCTAAACGGTCATGATGATAAAATCGTTAATCAGCTTAAGGCCAAGATGAAGGATATGTCTGACCAGATGG
AGTTTGAGCGTGCTGCGGAGTATCGCGATTTGATTGAGGCGGTTTCGACGCTTAGGACCAAGCAAAGGGTTATCCGTCAA
GACATGCAGGACCGTGATATCTTCGGTTACTACGTGGATAAGGGGTGGATGTGTGTTCAGGTTTTCTTTGTTCGCCAAGG
GAAACTCATTCAGCGTGATGTCAATATGTTCCCTTATTATAATGATGCTGAGGAAGATTTCCTAACCTATATGGGTCAGT
TTTATCTGGATAGTCGTCATCTCAAGCCTAAGGAGATTTTCATTCCAGGAGACATTGATCAAGAGTCTGTTGAGGCTCTA
GTTGGAGATGAGGTCAAGGTCTTTAAACCTCAACGTGGAGAGAAGAAGCAGTTGGTTAATCTGGCGACGAAAAATGCCCG
CGTCAGTTTGACCCAAAAATTTGATCTCCTCGAAAAAGACTTGGCTAAGACCCAAGGAGCTATTGAAAATCTAGGCAAAC
TCATGGGGATTCCGACACCGGTCCGTATCGAGTCTTTCGATAACTCTAATATCATGGGAACTAGCCCTGTCTCTGCCATG
GTTGTCTTTGAAAATGGTAAACCTAATAAAAAAGAGTACCGCAAATACAAGATTAAGACTGTTGAAGGCCCTGACGATTA
TGCCAGTATGCGTGAGGTCATTCGTCGTCGCTATAGTCGTGTCAAACGTGATGGTCTAACGCCACCAGACCTCATTATCA
TGGATGGTGGTCAAGGTCAGGTCAATGTAGCCAAGGATGTGCTTCGCAAGGAACTCAATCTATCTATCCCAGTTGCAGGT
CTTCAGAAAAATGACAAGCACCAAACCAATGAATTGCTTTTTGGAGATCCTTTGCGAGTCATTGATTTGCCACGTCAATC
CGAGGAATTTTTCCTCCTTCACCGTATTCAGGATGAAGTACACCGCTTTGCCATCACCTTCCATCGTCAAGTCCGTAGTA
AGAATAGTTTCAGTTCTAAACTTGATGGCGTGGAGGGGTTAGGACCTAAGCGCAAACAAAAACTCCTCAAATACTTCAAG
TCTATGACAGCTATCCAAAAAGCTACTGTTGAGGATATCCATGCCCTTGGCATTCCAGAAAAAGTAGCAGAGGCTCTGTT
AGATAAATTAAATGATAACAATTAA

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(16-87)

UvrB/uvrC motif (UVR)

(196-229)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(375-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

76.65

99.495

0.763
  uvrC Streptococcus pneumoniae R6

76.311

99.495

0.759
  uvrC Streptococcus pneumoniae D39

76.311

99.495

0.759