Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RDV59_RS03865 Genome accession   NZ_CP133476
Coordinates   760853..762640 (+) Length   595 a.a.
NCBI ID   WP_038675519.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LMG 11489     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 755853..767640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS03845 (RDV59_03845) - 756451..757659 (+) 1209 WP_038675513.1 ABC transporter permease -
  RDV59_RS03850 (RDV59_03850) rplJ 757950..758453 (+) 504 WP_038675515.1 50S ribosomal protein L10 -
  RDV59_RS03855 (RDV59_03855) rplL 758528..758896 (+) 369 WP_002886110.1 50S ribosomal protein L7/L12 -
  RDV59_RS03860 (RDV59_03860) rcrP 759104..760840 (+) 1737 WP_038675517.1 ABC transporter ATP-binding protein Regulator
  RDV59_RS03865 (RDV59_03865) rcrQ 760853..762640 (+) 1788 WP_038675519.1 ABC transporter ATP-binding protein Regulator
  RDV59_RS03870 (RDV59_03870) queA 762738..763781 (-) 1044 WP_038675521.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  RDV59_RS03875 (RDV59_03875) - 763932..764633 (+) 702 WP_038675523.1 glucosamine-6-phosphate deaminase -
  RDV59_RS03880 (RDV59_03880) - 764823..765806 (+) 984 WP_038675525.1 rhodanese-related sulfurtransferase -
  RDV59_RS03885 (RDV59_03885) - 765983..766180 (+) 198 WP_002885991.1 helix-turn-helix transcriptional regulator -
  RDV59_RS03890 (RDV59_03890) - 766194..766688 (+) 495 WP_038675527.1 DUF6773 family protein -
  RDV59_RS03895 (RDV59_03895) - 766767..767537 (+) 771 WP_002885931.1 nucleoside phosphorylase -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 66495.62 Da        Isoelectric Point: 5.3854

>NTDB_id=799686 RDV59_RS03865 WP_038675519.1 760853..762640(+) (rcrQ) [Streptococcus salivarius strain LMG 11489]
MKNNKKKTSHSSSFGRLWSYLQAYRFPLYLAIFLKIVSVIMSVLEPVVIGLAITELTKNTLAIMKGVEGARINVSYVGWV
LVVYLLRGLIYELAAYYSNYFMTNAVQATVQDMRNEMTEKINRTSVSYFDKHQFGDLLGRFTSDVETVSNALQQSFLQVV
NAVFTLALVIGTVLYLNLQLGAIVVITIPITFFGARYIMSKSQPYFKQQADALGTLNGFVQENLTGFNVLKLFGREDRSL
DDFKEITEDLQKVGFKANFISGLMMPVLNGLSDLTYLIVAVLGGLQVLAGRLTIGNMQAFVQYVWQINQPIQNLTQLAGQ
LQSAKSSLDRIFQLMDEPDEPNDATEVLAGDLTGQVSFKHVDFQYVADKPLIRDFNLEVNPGEMVAIVGPTGAGKSTIIN
LLMRFYDVTAGSISVDGHDIRNLSRQDYRKQFGMVLQDAWLFEGTIKENLRFGNLEATDEEIVEAAKAANVDHFIRTLPG
GYNMEMNQESSNISLGQKQLLTIARALLADPKILILDEATSSVDTRLELLIQKAMKALMQGRTSFVIAHRLSTIQEADKI
LVLKDGQIIEQGNHESLLADKGFYYDLYNSQFAEK

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=799686 RDV59_RS03865 WP_038675519.1 760853..762640(+) (rcrQ) [Streptococcus salivarius strain LMG 11489]
ATGAAGAATAATAAAAAGAAAACAAGTCATTCCTCAAGTTTTGGCCGCCTTTGGTCCTACTTGCAGGCTTATCGTTTCCC
ACTTTACCTAGCCATTTTCCTGAAAATTGTTAGTGTTATCATGAGTGTCCTTGAACCCGTAGTTATTGGTTTAGCTATTA
CCGAGTTGACTAAAAATACGCTGGCCATCATGAAGGGTGTGGAAGGTGCTCGTATCAACGTCTCCTATGTTGGTTGGGTT
CTAGTTGTTTATCTCTTGCGTGGTCTTATTTATGAGTTGGCCGCCTACTATTCCAACTATTTCATGACCAATGCTGTGCA
AGCAACGGTTCAAGATATGCGTAATGAGATGACTGAGAAAATCAATCGTACTTCAGTGTCATACTTTGATAAGCACCAGT
TTGGGGACCTCTTGGGACGCTTTACCAGTGACGTCGAGACAGTATCTAATGCCTTGCAGCAGTCATTCTTACAGGTTGTT
AATGCCGTCTTTACTCTAGCCTTGGTTATTGGAACAGTGCTTTACCTTAATCTTCAATTGGGAGCTATAGTTGTCATCAC
TATTCCGATTACATTCTTTGGTGCCCGCTATATCATGAGTAAGTCTCAGCCCTACTTCAAACAACAGGCTGATGCCCTGG
GTACTCTTAATGGTTTTGTTCAGGAAAATCTGACTGGTTTCAATGTGCTTAAGCTATTTGGTCGTGAGGATAGATCCTTG
GACGACTTTAAAGAAATTACGGAAGACCTTCAGAAAGTAGGCTTTAAGGCTAATTTCATTTCAGGACTTATGATGCCGGT
TCTTAACGGTTTATCTGACTTGACCTATCTCATTGTTGCTGTTCTAGGTGGTTTGCAAGTCTTGGCTGGTCGCTTGACGA
TTGGTAATATGCAGGCCTTTGTTCAGTATGTTTGGCAGATTAACCAACCTATTCAGAACTTGACTCAGTTGGCTGGACAA
TTGCAAAGTGCTAAATCTTCTTTAGACCGTATTTTCCAACTGATGGATGAACCAGACGAGCCTAATGATGCTACTGAAGT
GCTTGCCGGAGATTTGACTGGCCAAGTTAGCTTTAAGCATGTGGACTTCCAGTATGTGGCTGATAAACCTTTGATTCGTG
ACTTTAATCTTGAGGTTAATCCTGGCGAAATGGTGGCCATTGTCGGTCCTACCGGTGCCGGAAAATCAACGATTATCAAT
CTTCTCATGCGTTTCTATGATGTGACTGCTGGTTCTATTTCAGTTGATGGTCACGATATCCGTAACCTGTCTCGTCAGGA
TTATCGTAAACAGTTTGGTATGGTGCTTCAGGACGCTTGGCTCTTTGAAGGAACTATCAAAGAAAATCTTCGCTTTGGTA
ATCTTGAGGCGACTGACGAGGAAATTGTTGAAGCTGCTAAGGCAGCCAATGTGGATCACTTTATCCGTACTCTACCTGGT
GGTTACAACATGGAAATGAACCAGGAATCAAGTAACATCTCACTAGGACAAAAGCAACTTTTGACCATTGCACGTGCGCT
TTTGGCTGATCCTAAAATCTTGATTTTGGATGAAGCAACCTCATCGGTTGATACCCGTCTGGAACTCTTGATTCAAAAAG
CTATGAAGGCCCTCATGCAAGGTCGAACAAGCTTTGTCATTGCCCACCGTCTGTCAACTATCCAAGAAGCAGACAAAATT
TTGGTCCTTAAAGATGGTCAAATCATCGAACAAGGGAACCATGAATCCCTCCTTGCAGATAAAGGCTTCTATTACGACTT
GTATAATAGCCAGTTTGCGGAGAAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(373-521)

ABC transporter transmembrane region (ABC_membrane)

(29-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.114

100

0.422