Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   RDV58_RS06815 Genome accession   NZ_CP133475
Coordinates   1355507..1355941 (-) Length   144 a.a.
NCBI ID   WP_002263292.1    Uniprot ID   Q8DUK6
Organism   Streptococcus mutans strain LMG 14558     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1350507..1360941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV58_RS06795 (RDV58_06785) - 1350663..1351109 (-) 447 WP_025985889.1 hypothetical protein -
  RDV58_RS06800 (RDV58_06790) tpx 1351275..1351760 (-) 486 WP_002263295.1 thiol peroxidase -
  RDV58_RS06805 (RDV58_06795) rcrQ 1351957..1353711 (-) 1755 WP_002280030.1 ABC transporter ATP-binding protein Regulator
  RDV58_RS06810 (RDV58_06800) rcrP 1353701..1355503 (-) 1803 WP_002280031.1 ABC transporter ATP-binding protein Regulator
  RDV58_RS06815 (RDV58_06805) rcrR 1355507..1355941 (-) 435 WP_002263292.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  RDV58_RS06820 (RDV58_06810) queC 1356493..1357146 (+) 654 WP_002263291.1 7-cyano-7-deazaguanine synthase QueC -
  RDV58_RS06825 (RDV58_06815) queD 1357146..1357592 (+) 447 WP_002263290.1 6-carboxytetrahydropterin synthase QueD -
  RDV58_RS06830 (RDV58_06820) queE 1357589..1358305 (+) 717 WP_002263289.1 7-carboxy-7-deazaguanine synthase QueE -
  RDV58_RS06835 (RDV58_06825) queF 1358318..1358806 (+) 489 WP_002280032.1 preQ(1) synthase -
  RDV58_RS06840 (RDV58_06830) - 1358915..1359298 (+) 384 WP_002265142.1 DUF3021 family protein -
  RDV58_RS06845 (RDV58_06835) gdhA 1359410..1360759 (-) 1350 WP_002280033.1 NADP-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16720.58 Da        Isoelectric Point: 10.5126

>NTDB_id=799595 RDV58_RS06815 WP_002263292.1 1355507..1355941(-) (rcrR) [Streptococcus mutans strain LMG 14558]
MKEPFSEFKNLITATERYIQELSKSHGVEHLSGPQGWTVMFLKDNQGKEIFIKDIEKRLDISKSVTSNLIKRMEKNGFIS
VIPSRKDRRYKQIVLTPLGQEKAGKITVFLTDLKKLLLKDISQEDLSVARKVFKQIKQNLEKKE

Nucleotide


Download         Length: 435 bp        

>NTDB_id=799595 RDV58_RS06815 WP_002263292.1 1355507..1355941(-) (rcrR) [Streptococcus mutans strain LMG 14558]
ATGAAGGAGCCTTTTAGTGAATTTAAAAACCTCATTACAGCAACAGAAAGATATATTCAAGAATTATCCAAAAGCCATGG
TGTTGAACATCTGTCCGGACCTCAGGGATGGACAGTTATGTTTTTAAAGGATAATCAAGGAAAGGAAATTTTTATTAAAG
ATATTGAAAAAAGGTTAGATATCTCAAAATCTGTGACCAGTAATCTCATTAAACGAATGGAAAAAAATGGTTTTATTTCT
GTTATTCCTTCCAGAAAAGACAGACGATACAAGCAAATTGTTTTAACGCCATTAGGTCAGGAAAAAGCTGGAAAAATAAC
TGTTTTTTTAACAGATCTTAAAAAGTTGCTTCTAAAAGATATTAGTCAGGAAGACTTATCAGTTGCTCGGAAGGTTTTTA
AACAAATCAAACAAAATTTAGAAAAGAAGGAGTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(31-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DUK6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

100

100

1