Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RDV58_RS06805 Genome accession   NZ_CP133475
Coordinates   1351957..1353711 (-) Length   584 a.a.
NCBI ID   WP_002280030.1    Uniprot ID   -
Organism   Streptococcus mutans strain LMG 14558     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1346957..1358711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV58_RS06775 (RDV58_06765) - 1347478..1347828 (+) 351 WP_002263648.1 DUF1304 domain-containing protein -
  RDV58_RS06780 (RDV58_06770) - 1347885..1349117 (-) 1233 WP_002280028.1 HAMP domain-containing sensor histidine kinase -
  RDV58_RS06785 (RDV58_06775) - 1349123..1349809 (-) 687 WP_002263646.1 response regulator transcription factor -
  RDV58_RS06790 (RDV58_06780) - 1349810..1350433 (-) 624 WP_002264331.1 GTP pyrophosphokinase family protein -
  RDV58_RS06795 (RDV58_06785) - 1350663..1351109 (-) 447 WP_025985889.1 hypothetical protein -
  RDV58_RS06800 (RDV58_06790) tpx 1351275..1351760 (-) 486 WP_002263295.1 thiol peroxidase -
  RDV58_RS06805 (RDV58_06795) rcrQ 1351957..1353711 (-) 1755 WP_002280030.1 ABC transporter ATP-binding protein Regulator
  RDV58_RS06810 (RDV58_06800) rcrP 1353701..1355503 (-) 1803 WP_002280031.1 ABC transporter ATP-binding protein Regulator
  RDV58_RS06815 (RDV58_06805) rcrR 1355507..1355941 (-) 435 WP_002263292.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  RDV58_RS06820 (RDV58_06810) queC 1356493..1357146 (+) 654 WP_002263291.1 7-cyano-7-deazaguanine synthase QueC -
  RDV58_RS06825 (RDV58_06815) queD 1357146..1357592 (+) 447 WP_002263290.1 6-carboxytetrahydropterin synthase QueD -
  RDV58_RS06830 (RDV58_06820) queE 1357589..1358305 (+) 717 WP_002263289.1 7-carboxy-7-deazaguanine synthase QueE -

Sequence

Protein


Download         Length: 584 a.a.        Molecular weight: 64603.66 Da        Isoelectric Point: 5.7674

>NTDB_id=799593 RDV58_RS06805 WP_002280030.1 1351957..1353711(-) (rcrQ) [Streptococcus mutans strain LMG 14558]
MENKKKSLLSQMAPYLKGYKALFGLAVIFTIVSSTITVIGPDRLKEMTDTMTKGLAGKIDLDKIGEIALTLALLYFAGAL
VSYTASFIVSTLIQKFSQRLRNAIADKINKVPLKYFDSHSQGDTLSRVTNDVDLMTQSFNQSLVSMVAAIILLIGSIFMM
IKTNGALAATAILSVFAGFVLSTVIMAKSQPLFKKQQANLADVSGYVEEVYSGHNVVSSYNAIQQSKKQFENLNDQLFAS
MWKSQFFSGIMMPLMQFIGNFGYVMVCIVGATMAINGDITMGTIVAFMTYVRIFTQPIAQIAQGITQLQSANAAMGRVFE
FLDEEEIEDENHKVKQLEKVEGNVNFDNVFFGYSPDKTIIHDFSAHAKAGQKIAIVGPTGAGKTTIVNLLMRFYEVDRGM
ISIDGVNIHDMTREEVHDAFAMVLQDTWLFEGTVKENLIYNQKHIIDEQVIAAAKAVGVHHFIKTLPKGYDTVLDDSVTL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQRAMDHLMEGRTSFVIAHRLSTIRNADLILVMRDGNIIEQGS
HDQLMAENGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1755 bp        

>NTDB_id=799593 RDV58_RS06805 WP_002280030.1 1351957..1353711(-) (rcrQ) [Streptococcus mutans strain LMG 14558]
ATGGAAAATAAGAAGAAATCATTATTAAGCCAAATGGCTCCTTACCTTAAAGGCTATAAGGCTTTATTTGGACTTGCTGT
CATTTTTACTATCGTTTCAAGTACGATTACTGTTATTGGACCTGACCGGCTGAAAGAGATGACAGATACCATGACCAAAG
GGCTGGCAGGAAAAATTGATTTAGATAAAATCGGTGAGATTGCTCTAACCTTGGCTCTCTTATACTTTGCTGGTGCTTTG
GTTTCTTATACTGCTAGCTTTATTGTGTCCACTTTGATTCAAAAGTTTTCGCAACGTCTGCGCAATGCCATTGCAGATAA
AATCAATAAGGTACCGCTCAAATATTTTGATAGCCATTCACAAGGAGATACCTTGTCTCGAGTGACCAATGATGTGGATT
TAATGACACAGTCTTTCAACCAAAGTTTAGTTTCAATGGTAGCAGCTATAATTCTCCTGATTGGCTCTATTTTCATGATG
ATTAAAACCAATGGAGCTCTTGCAGCGACCGCTATTTTGTCTGTTTTTGCTGGTTTTGTGTTATCCACTGTTATCATGGC
CAAGAGCCAGCCGCTTTTTAAAAAGCAACAAGCTAATCTAGCCGATGTCAGCGGTTATGTTGAAGAGGTCTATTCAGGTC
ATAATGTGGTTTCTAGTTACAATGCGATTCAGCAAAGCAAGAAGCAGTTTGAAAACTTGAATGACCAATTATTTGCAAGT
ATGTGGAAATCACAATTCTTTTCTGGAATTATGATGCCCCTTATGCAATTCATCGGAAATTTTGGGTATGTCATGGTCTG
TATTGTCGGTGCTACCATGGCTATTAACGGCGATATTACTATGGGAACGATTGTTGCCTTTATGACTTACGTCCGTATTT
TTACTCAGCCCATTGCGCAGATTGCTCAAGGAATCACTCAATTGCAATCAGCTAATGCTGCTATGGGACGTGTCTTTGAA
TTTCTTGATGAGGAAGAAATAGAAGACGAAAACCATAAAGTTAAACAACTTGAAAAAGTTGAAGGAAATGTTAATTTTGA
CAATGTTTTCTTTGGTTATAGTCCTGATAAAACTATTATTCATGATTTCTCGGCTCATGCTAAGGCTGGTCAAAAAATTG
CTATTGTGGGACCGACTGGTGCGGGTAAGACAACGATTGTTAACTTACTTATGCGTTTCTATGAGGTTGATAGAGGGATG
ATTTCTATTGATGGAGTTAATATCCATGATATGACACGAGAAGAAGTGCATGATGCTTTTGCCATGGTACTCCAAGATAC
TTGGCTCTTTGAAGGTACAGTTAAGGAAAATCTGATTTATAATCAAAAACATATTATTGATGAGCAAGTGATTGCAGCAG
CTAAGGCAGTTGGTGTTCATCATTTCATCAAGACTTTACCTAAGGGTTATGATACTGTTTTAGATGATTCGGTCACCTTA
TCAGTCGGTCAAAAACAACTCTTGACCATTGCACGTGCTCTCCTTAAAGATGCACCGCTTCTGATACTTGATGAAGCAAC
TTCCTCTGTTGATACTCGTACGGAAGAACTTATTCAAAGGGCTATGGATCATTTGATGGAGGGGCGGACATCATTCGTTA
TTGCCCATCGTCTGTCAACTATTCGCAATGCTGATCTTATTCTTGTCATGAGAGATGGTAATATTATTGAACAAGGCAGC
CATGACCAATTGATGGCAGAAAATGGCTTCTATGCCGATCTCTATAATAGTCAATTTACAGAAGAAGTGGCTTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(361-508)

ABC transporter transmembrane region (ABC_membrane)

(24-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

99.658

100

0.997