Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   RDV58_RS01100 Genome accession   NZ_CP133475
Coordinates   205869..206624 (+) Length   251 a.a.
NCBI ID   WP_002263137.1    Uniprot ID   Q8DWM0
Organism   Streptococcus mutans strain LMG 14558     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 200869..211624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV58_RS01080 (RDV58_01080) mreD 201617..202123 (+) 507 WP_002263141.1 rod shape-determining protein MreD -
  RDV58_RS01085 (RDV58_01085) gbpB 202233..203522 (+) 1290 WP_002280387.1 glucan-binding protein GbpB -
  RDV58_RS01090 (RDV58_01090) - 203647..204615 (+) 969 WP_002263139.1 ribose-phosphate diphosphokinase -
  RDV58_RS01095 (RDV58_01095) - 204704..205879 (+) 1176 WP_002263138.1 pyridoxal phosphate-dependent aminotransferase -
  RDV58_RS01100 (RDV58_01100) recO 205869..206624 (+) 756 WP_002263137.1 DNA repair protein RecO Machinery gene
  RDV58_RS01105 (RDV58_01105) plsX 206832..207830 (+) 999 WP_002280386.1 phosphate acyltransferase PlsX -
  RDV58_RS01110 (RDV58_01110) - 207832..208080 (+) 249 WP_002280385.1 acyl carrier protein -
  RDV58_RS01115 (RDV58_01115) comA 208308..208889 (+) 582 WP_002280384.1 ATP-binding cassette domain-containing protein Regulator
  RDV58_RS01120 (RDV58_01120) purC 209011..209718 (+) 708 WP_002263133.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29353.88 Da        Isoelectric Point: 6.6577

>NTDB_id=799531 RDV58_RS01100 WP_002263137.1 205869..206624(+) (recO) [Streptococcus mutans strain LMG 14558]
MQTKETRGLVLYNRPFREDDKLVKIFTETSGKHMFFVRHATNSKLSSVIQPLILANFILKINNHGLSYIEDYKGVSLFKE
INADIYKLAYATYLVSLADAAISDAVYDAPLFAFLIKTLELMDEGLDYEILTNIFEIQILDRFGVQLNFHDCVFCHRVGL
AFDFSHRYSGLLCPEHYEKDLYRSHLDPNVPYLLNQFQTLHFDSLKTISVKPDMKQKLRKFIDEVYEDYIGLRLKSKKFI
DDLDHWGQVMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=799531 RDV58_RS01100 WP_002263137.1 205869..206624(+) (recO) [Streptococcus mutans strain LMG 14558]
ATGCAGACTAAAGAAACAAGAGGTTTAGTGCTTTATAATCGGCCATTTAGAGAGGATGATAAGCTGGTTAAAATTTTTAC
GGAAACTTCCGGCAAACACATGTTTTTTGTGCGTCATGCTACTAATTCAAAATTGTCTTCTGTCATTCAACCATTGATTC
TAGCTAATTTTATTTTAAAAATTAATAATCATGGACTTTCTTATATTGAAGATTATAAGGGAGTCTCTCTTTTTAAGGAA
ATTAATGCAGATATTTATAAATTAGCTTATGCTACTTACCTTGTGTCTTTGGCTGATGCTGCTATTTCAGATGCTGTCTA
TGATGCCCCTCTTTTTGCTTTTTTAATTAAGACCCTAGAATTGATGGATGAAGGTCTTGATTATGAAATATTGACCAATA
TTTTTGAAATCCAAATTCTAGATCGCTTTGGCGTTCAACTTAATTTTCATGACTGTGTTTTTTGCCATCGTGTCGGTTTA
GCTTTTGATTTTTCACATCGCTATTCAGGTCTTTTGTGTCCTGAACATTATGAAAAAGATCTTTATCGTAGTCACTTAGA
TCCTAATGTCCCTTACCTTTTGAACCAATTTCAAACTTTACATTTTGATAGCTTAAAGACCATTTCAGTTAAACCTGACA
TGAAACAAAAGCTGAGAAAATTTATTGATGAAGTTTATGAGGACTATATTGGTCTTCGTCTCAAAAGTAAAAAATTTATT
GATGATTTAGATCACTGGGGACAAGTTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DWM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

65.339

100

0.653