Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   P2C01_RS17365 Genome accession   NZ_CP119522
Coordinates   411581..413632 (-) Length   683 a.a.
NCBI ID   WP_275725435.1    Uniprot ID   -
Organism   Vibrio furnissii strain C1     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 406581..418632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P2C01_RS17350 clcA 407503..408900 (+) 1398 WP_004728183.1 H(+)/Cl(-) exchange transporter ClcA -
  P2C01_RS17355 - 409061..410020 (+) 960 WP_004728184.1 TDT family transporter -
  P2C01_RS17360 cqsA 410238..411419 (+) 1182 WP_275725433.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  P2C01_RS17365 cqsS 411581..413632 (-) 2052 WP_275725435.1 response regulator Regulator
  P2C01_RS17370 - 413772..416813 (-) 3042 WP_275725438.1 SbcC/MukB-like Walker B domain-containing protein -
  P2C01_RS17375 - 416817..417959 (-) 1143 WP_275725440.1 exonuclease SbcCD subunit D -

Sequence

Protein


Download         Length: 683 a.a.        Molecular weight: 78686.45 Da        Isoelectric Point: 6.0594

>NTDB_id=799474 P2C01_RS17365 WP_275725435.1 411581..413632(-) (cqsS) [Vibrio furnissii strain C1]
MEVVKKIYQYAEPNLTLVGWMGFIGFPFYYYVWAHVFPQPYESLLLRGFCSCLFGGIVFRNAVPKLWQRYLPYYYLFMIG
FCLPFFFAYMMLMNDWSTVWAMSFMASIFLHILLVHETKVMLAQAALSVAAAYGAVYWLQHYEPQHVILWPYVPIFLFTY
VFGNLFYFRNQSSHESKVSIAKSFGAGIAHEMRNPLSALKSSVDVLRSILPAQPANPTQGAYIDGQDLTLLHEILGNADE
VIHTGNETIDLLLTSIDENRVSTSTFKRLSAKEVVDHALHSFSYKRALDRQAVTLNAINDFDYFGSETLLKFALYNLLKN
AFYYQNSEHFHIEVTLITRGQENLIVVRDNGVGIAPDRLDDIFKDFYTFGKNGSYGLGLPFCRKVMKSFGGNIRCASVLG
EWTEFTLSFPQYHSERVSHIKLDLMKNKSVLYVGTQGLMSRHLSEKAFYQGFRLHHATLSEALTREEYEFEYDIILLDLE
QIGDQWQSLVELETKLHFTEAKIVYLYDKQRAYPINIERHLRVVPLDIRQLLLDTDKELDQLLFEVDDVAPDHNVVPIKQ
PKYERRILVVDDNQSLRTFTALLLEKQGYEVVQANDGQQALDAMEHNEFDLILMDIEMPIIDGIEATRVIRDSNKPYCHI
PIVGHTGDNSPLTIEKIHQSGMNDYIVKPADKDKLLGKLANWI

Nucleotide


Download         Length: 2052 bp        

>NTDB_id=799474 P2C01_RS17365 WP_275725435.1 411581..413632(-) (cqsS) [Vibrio furnissii strain C1]
ATGGAAGTCGTAAAGAAAATATACCAATATGCTGAACCGAACCTCACGTTAGTGGGGTGGATGGGGTTTATTGGTTTTCC
GTTTTACTACTATGTGTGGGCGCATGTGTTTCCGCAGCCCTATGAATCGCTGCTGCTGCGCGGTTTCTGTTCGTGCCTGT
TTGGCGGCATTGTGTTTCGAAACGCAGTGCCGAAGTTGTGGCAGCGCTACTTACCTTACTATTACCTGTTTATGATCGGC
TTCTGTTTGCCGTTCTTCTTTGCCTACATGATGCTGATGAACGATTGGTCCACGGTGTGGGCAATGTCATTCATGGCGTC
CATCTTCCTACATATTCTGCTGGTTCATGAGACCAAAGTGATGCTGGCGCAAGCTGCGTTATCCGTCGCGGCGGCGTATG
GCGCCGTGTATTGGTTGCAACATTACGAACCACAGCATGTCATTTTGTGGCCTTATGTGCCGATTTTCCTGTTCACATAC
GTATTCGGGAATCTGTTCTATTTCAGAAACCAAAGCTCGCATGAGTCGAAGGTGTCGATCGCGAAATCCTTTGGCGCCGG
GATTGCACATGAAATGCGTAACCCGCTCAGTGCGTTGAAATCGTCGGTTGATGTGCTGCGTTCGATTTTGCCCGCACAGC
CGGCCAATCCAACCCAAGGTGCATACATCGACGGACAGGATTTAACTTTGCTGCATGAAATTTTGGGCAACGCTGACGAA
GTGATCCACACCGGGAACGAAACCATCGACCTGTTACTCACATCTATCGATGAAAACCGCGTCTCGACCTCAACATTCAA
GCGTTTGTCGGCCAAAGAGGTGGTTGACCACGCCCTGCATTCCTTCTCGTACAAACGCGCGTTGGATCGTCAGGCCGTCA
CGCTCAATGCCATCAACGATTTTGACTATTTCGGCAGTGAAACCTTGCTGAAGTTTGCCCTCTACAACTTATTAAAAAAT
GCCTTTTACTATCAGAACAGTGAACATTTTCATATCGAAGTGACGCTCATCACTCGGGGTCAAGAAAACCTCATCGTCGT
ACGAGATAACGGCGTGGGCATCGCCCCCGATCGCTTGGATGACATTTTTAAGGACTTTTATACCTTTGGCAAAAATGGCA
GTTACGGTTTGGGTTTGCCGTTTTGTCGCAAGGTGATGAAGTCGTTCGGTGGCAATATCCGTTGTGCCTCCGTGCTGGGG
GAATGGACGGAGTTCACGTTAAGTTTTCCTCAATATCACTCTGAACGGGTCTCGCACATCAAACTGGATTTAATGAAAAA
TAAATCGGTGTTGTATGTTGGTACGCAAGGGCTGATGAGCCGACATCTGAGCGAGAAAGCGTTTTACCAAGGATTTCGCC
TACATCACGCAACGCTGAGCGAGGCGTTAACGCGTGAAGAGTACGAGTTTGAATACGATATTATTCTGCTGGATTTAGAG
CAGATCGGCGATCAGTGGCAGTCATTGGTCGAGCTGGAAACCAAGCTGCATTTTACCGAAGCCAAAATTGTTTACCTTTA
CGACAAGCAACGCGCATACCCCATCAATATTGAGCGCCATTTGCGGGTGGTGCCTTTAGACATTCGTCAACTGCTGCTCG
ATACCGACAAAGAACTCGATCAACTGCTGTTTGAGGTGGATGACGTTGCGCCGGATCACAATGTTGTGCCGATCAAACAA
CCAAAATATGAACGCCGTATTCTGGTGGTGGATGACAACCAATCACTGCGCACATTCACGGCGTTGCTGCTTGAAAAGCA
GGGCTATGAAGTGGTGCAGGCCAATGATGGTCAACAGGCGTTGGATGCAATGGAGCACAACGAGTTCGACCTGATTTTGA
TGGACATTGAAATGCCGATCATTGATGGCATTGAAGCGACGCGCGTGATTCGGGATTCCAATAAGCCGTACTGCCATATT
CCGATTGTTGGCCATACCGGGGATAACAGCCCGCTGACGATTGAGAAAATCCACCAATCTGGCATGAACGATTACATCGT
TAAACCGGCCGATAAAGACAAGCTGCTGGGCAAACTGGCCAATTGGATCTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(567-679)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(307-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

59.064

100

0.592