Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   P2C01_RS17360 Genome accession   NZ_CP119522
Coordinates   410238..411419 (+) Length   393 a.a.
NCBI ID   WP_275725433.1    Uniprot ID   -
Organism   Vibrio furnissii strain C1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 405238..416419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P2C01_RS17345 - 406037..407032 (-) 996 WP_275725431.1 CobW family GTP-binding protein -
  P2C01_RS17350 clcA 407503..408900 (+) 1398 WP_004728183.1 H(+)/Cl(-) exchange transporter ClcA -
  P2C01_RS17355 - 409061..410020 (+) 960 WP_004728184.1 TDT family transporter -
  P2C01_RS17360 cqsA 410238..411419 (+) 1182 WP_275725433.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  P2C01_RS17365 cqsS 411581..413632 (-) 2052 WP_275725435.1 response regulator Regulator

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43570.46 Da        Isoelectric Point: 6.6116

>NTDB_id=799473 P2C01_RS17360 WP_275725433.1 410238..411419(+) (cqsA) [Vibrio furnissii strain C1]
MKSDAKNNRLPDSIQDRLNFFVRDLIESNQNGKHLVLGKRPSQGDIVLQSNDYLSLANHPLIKARLKQAIDTTHDSVFMS
AIFLQDDETKPSLEHQLAEFVNFDSCLLSQSGWNANTSLLQTVCAPGSNVYIDFFAHMSMWEGARYANANIHPFMHNNCD
HLRKQIQRHGPGLIVVDSIYSTIGTLAPLTELVHIAKETQCAILVDESHSLGTHGDKGAGLLAELGLSDQVDFMTASLAK
TFAYRAGVIWANNNANQCIPFVGYPAIFSSTILPYEIAALEATLEVIKSANDRRENLFHNTQLLSQGLNKIGIHIRSQSQ
IIALETGDEKNTEKVRDYLEDNGVFGAVFCRPATSKTKNIIRLSLTSAVTEQQIDRILSVCQSAVKRGDMIFK

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=799473 P2C01_RS17360 WP_275725433.1 410238..411419(+) (cqsA) [Vibrio furnissii strain C1]
ATGAAATCTGATGCCAAAAATAATCGGTTACCTGACTCGATTCAGGACCGTTTGAATTTTTTCGTTCGCGATTTAATTGA
AAGCAATCAAAACGGTAAACATCTGGTATTAGGAAAGCGCCCCTCCCAAGGTGATATTGTTTTACAAAGTAACGATTACC
TCAGCCTTGCCAACCATCCATTGATCAAGGCGCGTTTAAAACAGGCCATTGATACCACGCACGACAGTGTGTTTATGTCG
GCTATTTTCTTACAAGATGATGAAACCAAACCTAGCCTAGAGCACCAACTGGCTGAGTTTGTCAATTTCGACTCGTGTCT
GTTGTCTCAGTCGGGTTGGAATGCCAATACGTCGCTACTGCAGACCGTCTGCGCACCGGGCAGCAATGTCTATATCGACT
TCTTTGCGCACATGTCGATGTGGGAAGGTGCGCGTTATGCCAATGCGAACATTCATCCGTTCATGCATAACAATTGTGAC
CATTTGCGCAAACAGATCCAACGTCATGGCCCTGGGCTCATTGTGGTCGATTCCATCTACAGCACCATTGGTACGCTTGC
GCCGCTGACTGAATTGGTTCATATCGCCAAAGAGACTCAGTGCGCCATATTGGTCGATGAATCGCATTCACTCGGCACCC
ATGGCGATAAAGGCGCTGGCTTACTGGCGGAATTGGGGCTCTCCGATCAGGTCGATTTTATGACCGCGAGTTTGGCAAAA
ACATTTGCGTATCGTGCGGGGGTTATTTGGGCAAATAACAACGCGAATCAATGTATTCCTTTTGTGGGCTATCCTGCGAT
ATTCAGCTCGACGATATTACCGTATGAAATAGCCGCATTAGAAGCGACATTAGAGGTCATTAAATCGGCCAACGATCGTC
GCGAGAATTTATTTCACAATACACAACTATTATCACAAGGATTAAATAAAATTGGTATTCACATTCGTAGCCAATCCCAA
ATTATCGCATTGGAAACAGGCGATGAAAAAAATACAGAAAAAGTCCGTGATTATTTAGAAGACAATGGCGTTTTCGGCGC
CGTATTTTGTCGACCGGCCACCTCGAAAACGAAAAATATTATTCGCTTGTCGTTAACCAGTGCCGTCACGGAACAACAGA
TCGACCGCATTTTGTCGGTGTGTCAAAGCGCGGTAAAACGGGGGGATATGATCTTTAAATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

68.052

97.964

0.667