Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   RDV54_RS05475 Genome accession   NZ_CP133471
Coordinates   1151545..1152141 (+) Length   198 a.a.
NCBI ID   WP_000248752.1    Uniprot ID   -
Organism   Streptococcus mitis strain LMG 14557     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1146545..1157141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV54_RS05450 (RDV54_05450) mapZ 1147483..1148892 (-) 1410 WP_000039297.1 cell division site-positioning protein MapZ -
  RDV54_RS05455 (RDV54_05455) - 1148906..1150063 (-) 1158 WP_000711362.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  RDV54_RS05465 (RDV54_05465) gpsB 1150549..1150878 (-) 330 WP_000146535.1 cell division regulator GpsB -
  RDV54_RS05470 (RDV54_05470) - 1150951..1151478 (-) 528 WP_004239174.1 DUF1273 domain-containing protein -
  RDV54_RS05475 (RDV54_05475) recU 1151545..1152141 (+) 597 WP_000248752.1 Holliday junction resolvase RecU Machinery gene
  RDV54_RS05480 (RDV54_05480) pbp1a 1152138..1154321 (+) 2184 WP_001041321.1 penicillin-binding protein PBP1A -
  RDV54_RS05485 (RDV54_05485) amiA3 1154464..1156443 (-) 1980 WP_000857579.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23126.60 Da        Isoelectric Point: 9.8515

>NTDB_id=799458 RDV54_RS05475 WP_000248752.1 1151545..1152141(+) (recU) [Streptococcus mitis strain LMG 14557]
MVNYPHKISSKKSQTSISQPKNFANRGMTFEKMINATNDYYLTHGMAVIHKKPTPVQIVRVDYPQRSRAKIVEAYFRQAS
TTDYSGVYRGYYIDFEAKETRQKNAIPMKNFHLHQIQHMEQVLEQQGICFVLLHFSSQQETYLLPALDLIRFYHQDKGQK
SMPLGYIQEYGYLVKQGAFPQIPYLDIIKEHLLGGKTR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=799458 RDV54_RS05475 WP_000248752.1 1151545..1152141(+) (recU) [Streptococcus mitis strain LMG 14557]
ATGGTCAACTATCCTCATAAAATTTCATCAAAAAAAAGCCAAACATCCATTTCTCAACCAAAAAATTTCGCAAATCGAGG
AATGACTTTTGAAAAGATGATCAACGCTACCAACGACTACTATCTGACGCATGGCATGGCAGTTATCCATAAAAAGCCGA
CGCCTGTTCAAATTGTTCGAGTAGACTATCCTCAACGTAGTCGAGCCAAAATTGTAGAAGCCTATTTTAGACAAGCTTCC
ACAACAGATTATTCTGGGGTGTATAGAGGATATTACATTGACTTTGAAGCTAAAGAAACGCGGCAAAAAAATGCTATCCC
AATGAAGAACTTCCATCTTCACCAGATTCAACATATGGAACAAGTTCTAGAACAGCAGGGCATTTGCTTCGTACTGCTTC
ATTTTTCTTCTCAACAAGAAACTTATTTGTTGCCGGCACTTGATTTAATTCGCTTTTATCATCAAGATAAGGGGCAGAAA
TCAATGCCACTTGGATATATTCAAGAATACGGATATTTAGTAAAGCAAGGAGCCTTCCCTCAAATACCCTATCTCGATAT
TATCAAAGAACATTTACTAGGTGGTAAAACAAGATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(26-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

49

100

0.495