Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   P2C01_RS12510 Genome accession   NZ_CP119521
Coordinates   2693253..2693870 (+) Length   205 a.a.
NCBI ID   WP_014204466.1    Uniprot ID   A0A0Q2MAY4
Organism   Vibrio furnissii strain C1     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2688253..2698870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P2C01_RS12485 panC 2688697..2689578 (+) 882 WP_275722927.1 pantoate--beta-alanine ligase -
  P2C01_RS12490 - 2689653..2690423 (-) 771 WP_004729049.1 ABC transporter permease -
  P2C01_RS12495 - 2690429..2691346 (-) 918 WP_143680351.1 ABC transporter ATP-binding protein -
  P2C01_RS12500 can 2691689..2692357 (+) 669 WP_004729053.1 carbonate dehydratase -
  P2C01_RS12505 hpt 2692405..2692932 (-) 528 WP_004729056.1 hypoxanthine phosphoribosyltransferase -
  P2C01_RS12510 opaR 2693253..2693870 (+) 618 WP_014204466.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  P2C01_RS12515 lpdA 2693989..2695416 (-) 1428 WP_004729062.1 dihydrolipoyl dehydrogenase -
  P2C01_RS12520 aceF 2695689..2697578 (-) 1890 WP_275722933.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23851.20 Da        Isoelectric Point: 6.2312

>NTDB_id=799458 P2C01_RS12510 WP_014204466.1 2693253..2693870(+) (opaR) [Vibrio furnissii strain C1]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFANRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTYVVRQFSNFL
TDNIDLDMHAKDNIANITREMVRLANDDCHWLKVWFEWSASTRDEVWPLFVSSNRTNQLLLKNMFSKAIERGEVCEQHDA
DDLATLFHGVCYSLFVQANRVRDEGYMQKLVKSYLDMLCIYKRDH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=799458 P2C01_RS12510 WP_014204466.1 2693253..2693870(+) (opaR) [Vibrio furnissii strain C1]
ATGGACGCATCGATAGAGAAACGCCCTAGAACGCGGCTATCTCCCCAAAAACGTAAACTTCAGTTGATGGAAATCGCGCT
GGAAGTATTTGCAAATCGTGGGATTGGTCGTGGCGGTCACGCCGACATCGCAGAAATTGCTCAAGTTTCTGTCGCGACCG
TATTCAACTATTTCCCAACGCGCGAAGATTTGGTCGACGACGTGCTCACTTACGTGGTTCGTCAGTTCTCCAACTTCCTG
ACCGACAACATCGATCTGGACATGCACGCGAAAGACAACATTGCGAACATCACCCGCGAAATGGTTCGTCTGGCCAATGA
CGATTGCCACTGGCTGAAAGTGTGGTTTGAGTGGAGCGCATCCACCCGTGATGAAGTATGGCCCCTGTTTGTGTCTAGCA
ACCGCACCAACCAACTGCTGCTGAAAAACATGTTCTCAAAAGCGATTGAACGGGGTGAAGTATGCGAGCAACACGATGCA
GATGATCTGGCGACGCTGTTCCATGGCGTGTGCTATTCCCTGTTTGTGCAAGCAAACCGTGTACGCGATGAAGGCTACAT
GCAGAAGCTGGTGAAGAGCTACCTCGACATGCTGTGCATCTATAAACGCGATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2MAY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

80.198

98.537

0.79
  hapR Vibrio cholerae C6706

77.723

98.537

0.766
  hapR Vibrio cholerae strain A1552

77.723

98.537

0.766