Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   P0M04_RS27645 Genome accession   NZ_CP119520
Coordinates   6273487..6275853 (-) Length   788 a.a.
NCBI ID   WP_259451139.1    Uniprot ID   -
Organism   Telluria mixta strain ACM 1762     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6268487..6280853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P0M04_RS27620 (P0M04_27630) dcd 6269163..6269729 (-) 567 WP_259451144.1 dCTP deaminase -
  P0M04_RS27625 (P0M04_27635) - 6269776..6270612 (-) 837 WP_259451143.1 alpha/beta fold hydrolase -
  P0M04_RS27630 (P0M04_27640) - 6270696..6271187 (-) 492 WP_259451142.1 Spy/CpxP family protein refolding chaperone -
  P0M04_RS27635 (P0M04_27645) - 6271322..6272008 (+) 687 WP_259451141.1 response regulator transcription factor -
  P0M04_RS27640 (P0M04_27650) - 6272011..6273486 (+) 1476 WP_259451140.1 HAMP domain-containing sensor histidine kinase -
  P0M04_RS27645 (P0M04_27655) comA 6273487..6275853 (-) 2367 WP_259451139.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  P0M04_RS27650 (P0M04_27660) - 6275979..6278930 (-) 2952 WP_259451138.1 TonB-dependent siderophore receptor -
  P0M04_RS27655 (P0M04_27665) - 6279181..6279912 (-) 732 WP_281042117.1 hypothetical protein -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 84694.54 Da        Isoelectric Point: 10.3336

>NTDB_id=799433 P0M04_RS27645 WP_259451139.1 6273487..6275853(-) (comA) [Telluria mixta strain ACM 1762]
MRIAICSFVAGVAWLQCRAALPTWSALAFGAALLLACLVVRRPRRRIPLLIAGGALLGFGWAAFLAHGTLADRLAAVDEG
RDVTLVGTIDNLPYRFEGGVRFNFVVERVIGVTIKVPRRVALSWYSGLRNKVAAVGDVQPGQRWQLTVRLQRPHGNANPG
GFDYEAWLLEQGVRATGYVRADDGNGQLDAFVASPGAVVERVRAALRARIQAALAGRTYAGVIVALVIGDQRGIDQADWQ
VFNRTGIGHLISISGLHITMIAGLAAWAVSALWRRSFFTDARLPLRLPAQKVAALTGAIVALLYVLLAGFGVPAQRTLYM
LSVVALALWMGRLAAVSHVLCAALGVVVLLDPWAVLWPGFWLSFGAVAAILFAGHGRIGPPPAGPRGALLLAGRTQWAVT
AGLVPLTLLLFGQVSIVSPVANAVAIPLVSFVVTPLALAGSLVPGPPGDWLLLLAHWTVEMLAWLLRQMAAWPGAVWRAP
APQAWVFALGLGGTLWLLMPRGWPHRWAGAVALLPMLLQLPDHPPVGGFRVTAFDVGQGMALLVETERHRLLYDTGPAYA
PGADGGSRVILPYLRMRGIGALDGIVVSHGDTDHSGGALAVLEGVDAGWLASSLPADHAIVRAARRHVRCGAGQHWEWDG
ITFDMLHPTPASYDDGHLKTNARSCTLRISNGRRTVLLAGDIEAAQEAALLERAPDRLRADVLLAPHHGSGTSSTLAFLQ
AVRPGIAVFQVGYRNRYHHPKPEVYARYGAIGVERLRTDEAGALTLDFDTDVAWRSYRTAHARYWYVR

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=799433 P0M04_RS27645 WP_259451139.1 6273487..6275853(-) (comA) [Telluria mixta strain ACM 1762]
ATGCGGATCGCGATATGCAGCTTTGTCGCCGGCGTCGCGTGGCTGCAATGCCGGGCTGCGCTTCCAACATGGAGTGCACT
GGCATTCGGGGCGGCCTTGCTGCTGGCCTGCCTCGTGGTTCGTCGACCGCGGCGGCGGATCCCTCTGTTGATTGCCGGCG
GCGCACTGTTGGGTTTTGGCTGGGCGGCGTTCCTCGCGCACGGCACGCTCGCGGACCGGTTGGCCGCAGTGGACGAGGGA
CGCGACGTCACCCTGGTCGGCACCATCGATAATCTGCCGTATCGCTTCGAAGGTGGCGTGCGCTTCAATTTCGTGGTCGA
GCGAGTCATCGGTGTCACGATCAAGGTGCCGCGGCGCGTAGCGCTTTCCTGGTATTCGGGCTTGCGCAACAAGGTTGCCG
CGGTCGGCGATGTCCAGCCGGGCCAGCGCTGGCAGCTGACGGTGCGCCTGCAGCGCCCCCACGGCAATGCGAATCCGGGC
GGCTTCGACTACGAGGCATGGCTGCTGGAGCAGGGCGTGCGCGCCACCGGCTACGTGCGCGCCGACGACGGCAACGGGCA
GCTGGATGCGTTCGTGGCGAGTCCCGGCGCGGTCGTCGAGCGTGTGCGTGCGGCGCTGCGTGCGCGCATCCAGGCGGCGC
TCGCGGGGCGCACGTACGCGGGCGTGATCGTGGCGCTCGTGATTGGCGACCAGCGCGGCATCGACCAGGCCGACTGGCAG
GTGTTCAACCGCACCGGGATCGGCCACCTCATCTCGATTTCGGGCCTGCACATCACGATGATCGCGGGGCTCGCCGCGTG
GGCCGTGTCGGCCCTGTGGCGCCGCTCGTTCTTCACCGATGCGCGCCTGCCGCTGCGGCTGCCGGCGCAGAAGGTCGCGG
CGTTGACCGGAGCCATCGTCGCCTTGCTGTATGTGCTGCTGGCGGGCTTCGGCGTGCCGGCGCAGCGTACCCTGTACATG
CTGTCCGTCGTCGCGCTGGCGTTGTGGATGGGGCGTCTCGCCGCGGTGTCGCACGTGTTGTGCGCGGCGCTCGGCGTGGT
CGTGCTGCTCGATCCGTGGGCCGTGCTGTGGCCGGGGTTCTGGCTGTCGTTCGGCGCCGTCGCCGCCATCCTGTTCGCGG
GACATGGCCGCATCGGACCGCCACCCGCCGGTCCACGCGGTGCGCTGCTTCTGGCGGGACGGACGCAATGGGCCGTCACG
GCGGGGCTCGTGCCGTTGACGCTGCTGTTGTTCGGCCAGGTGTCGATCGTGAGCCCGGTCGCGAATGCGGTGGCGATCCC
GCTCGTCAGCTTCGTCGTGACGCCGCTCGCGCTGGCCGGCAGCCTGGTCCCGGGACCGCCGGGCGACTGGCTGCTCCTGC
TCGCGCACTGGACCGTGGAGATGCTCGCGTGGCTGCTGCGCCAGATGGCGGCATGGCCCGGTGCCGTGTGGCGCGCGCCG
GCACCGCAGGCGTGGGTGTTCGCGCTGGGCCTTGGCGGCACATTGTGGCTGCTGATGCCGCGCGGCTGGCCGCATCGCTG
GGCGGGTGCCGTCGCGCTGTTGCCGATGCTGCTGCAACTGCCGGACCATCCGCCTGTGGGAGGCTTTCGCGTGACGGCAT
TCGACGTGGGGCAGGGTATGGCGCTGCTCGTCGAAACGGAACGGCACCGCCTGCTGTACGACACCGGCCCCGCCTACGCG
CCCGGCGCGGATGGCGGCAGCCGTGTGATCCTTCCGTACCTGAGGATGCGGGGCATCGGCGCGCTCGACGGCATCGTCGT
CAGCCACGGCGACACCGACCATTCTGGTGGCGCGCTGGCGGTGCTGGAGGGCGTCGATGCGGGTTGGCTCGCGTCGTCGC
TGCCCGCGGATCACGCGATCGTCCGCGCAGCGCGCCGCCACGTGCGCTGCGGCGCGGGCCAGCACTGGGAGTGGGACGGC
ATCACGTTCGACATGCTGCATCCGACGCCGGCCAGCTATGACGACGGGCACCTGAAGACGAACGCGCGCAGCTGCACGCT
CCGCATCAGCAATGGCCGGCGCACGGTGCTGCTGGCGGGCGACATCGAGGCGGCGCAGGAAGCGGCGCTCCTCGAGCGCG
CGCCCGACCGCCTGCGCGCGGACGTGCTACTCGCACCGCACCACGGCAGCGGCACGTCGTCCACGCTGGCGTTCCTGCAG
GCGGTGCGGCCCGGCATCGCAGTCTTCCAGGTCGGGTACCGCAACCGCTACCACCACCCCAAGCCCGAGGTCTACGCACG
CTACGGGGCGATCGGTGTCGAGCGGCTGCGGACCGACGAAGCGGGCGCGCTGACGCTGGACTTCGACACGGACGTGGCGT
GGCGCAGCTACCGCACGGCGCACGCGCGCTACTGGTACGTACGCTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(226-502)

Metallo-beta-lactamase superfamily (Lactamase_B)

(536-728)

Domain of unknown function (DUF4131) (DUF4131)

(22-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

49.64

100

0.525
  comA Pseudomonas stutzeri DSM 10701

39.071

92.893

0.363