Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   RDV54_RS02750 Genome accession   NZ_CP133471
Coordinates   553049..556324 (-) Length   1091 a.a.
NCBI ID   WP_004239416.1    Uniprot ID   -
Organism   Streptococcus mitis strain LMG 14557     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 548049..561324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV54_RS02740 (RDV54_02740) - 548206..549384 (-) 1179 WP_000174770.1 hypothetical protein -
  RDV54_RS02745 (RDV54_02745) rexA 549402..553052 (-) 3651 WP_000802633.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  RDV54_RS02750 (RDV54_02750) rexB 553049..556324 (-) 3276 WP_004239416.1 ATP-dependent nuclease subunit B Machinery gene
  RDV54_RS02755 (RDV54_02755) - 556442..557251 (+) 810 WP_000593586.1 Cof-type HAD-IIB family hydrolase -
  RDV54_RS02760 (RDV54_02760) aguB 557346..558221 (-) 876 WP_001246745.1 N-carbamoylputrescine amidase -
  RDV54_RS02765 (RDV54_02765) aguA 558231..559316 (-) 1086 WP_000969480.1 agmatine deiminase -
  RDV54_RS02770 (RDV54_02770) nspC 559313..560440 (-) 1128 WP_000764388.1 carboxynorspermidine decarboxylase -

Sequence

Protein


Download         Length: 1091 a.a.        Molecular weight: 124754.60 Da        Isoelectric Point: 5.6707

>NTDB_id=799428 RDV54_RS02750 WP_004239416.1 553049..556324(-) (rexB) [Streptococcus mitis strain LMG 14557]
MKLLYTDIRTSLTEILTREAEELVAAGKRVFYIAPNSLSFEKERAVLECLSQQASFAITVTRFAQMARYLILNDLPAKIS
LDDIGLGMAFYRCLTELDPKDLRVYGAIKQDPQFIQQLIDLYHEMTKAQMSFVDLESLTDEDKRADLLLIFEKVTAYLNQ
GQLAQGSQLSHLIEAIENDKVSSDFTQIALVIDGFTRFSAEEERIVDLLHAKGVEIVIGAYVSKKAYTSPFSEGNLYQAS
VEFLHHLAFKYQTPAQDYSQTHEKMDSFDKASRLLESSYDFSELSLEIDDRDRENLQIWSCLTQKEELELVARSIRQKLH
ENSNLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSESMAHHPLTQFVESILALKRYRFRQEDLINLLRTGLYTDL
SQADIDAFEQYIRYLGINGLPAFQQAFTKSHHGKFDLGRLNALRLRIVTPLETLFASRKQKAENLLQKWNVFLKEGAVTK
QLQDLTATMKVLEQERQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSLSQYRTIPATVNTVLVQSYDLIAPLT
ADFVYAIGLTQDNLPKIAQNTSLLTDEERQSLNQATEEGVQLLIASSENLKKNRYTMLSLVNSARKQLILSSPSLFNESE
SKESAYLQELVSFGFSRREKRMSHKNLSKEDIGSYHSLLSSLVAYHQQGEMSETEQDLTFIKVLARVMGKKLDQQGLENP
ALPTSPSSKPLAKDTLQALYPAEQEFYLSTSGLTEFYRNEYSYFLRYVLGLQEELRLRPDARSHGNFLHRIFERALQLPN
EDSFDKRLEQAIQETSQEREFEAIYQESLEAQFTKEVLLDVARTTGHILRHNPAIETIKEESNFGGKEQAFIQLDNGRSV
FVRGKVDRIDRLKADGAIGVVDYKSSLTQFQFPHFFNGLNSQLPTYLAALKREGEQNFFGAMYLEMAEPVQSLMAVKSLA
GAVVEASKSMKYQGLFLEKESSHLGEFYNKNKANQLTDEEFQLLLDYNAHLYKKAAEKILEGQFAINPYTENGRSIAPYV
QQHQAITGFEANYHLGQARFLEKLDLADGKRLVGEKLKQAWFEKIREELNR

Nucleotide


Download         Length: 3276 bp        

>NTDB_id=799428 RDV54_RS02750 WP_004239416.1 553049..556324(-) (rexB) [Streptococcus mitis strain LMG 14557]
ATGAAATTACTTTATACTGATATTCGGACTTCTTTGACAGAAATTCTAACTAGAGAGGCAGAAGAGTTAGTTGCTGCTGG
CAAGCGGGTCTTTTACATCGCTCCCAACTCTCTTTCTTTTGAAAAGGAACGCGCCGTGCTGGAATGCTTGTCCCAGCAGG
CTTCTTTTGCGATTACCGTCACGCGCTTTGCTCAAATGGCTCGTTACCTGATTTTGAATGATTTGCCAGCTAAGATCAGT
CTTGATGATATCGGTCTTGGTATGGCCTTTTACAGATGTCTTACTGAACTTGATCCAAAAGACTTACGAGTATACGGCGC
CATCAAGCAGGATCCTCAGTTTATCCAGCAGTTGATTGATCTTTATCATGAGATGACCAAAGCTCAGATGAGTTTTGTGG
ACTTGGAGAGTTTGACGGATGAGGATAAGAGAGCCGATTTACTCTTGATTTTTGAGAAAGTAACGGCCTACCTCAATCAA
GGGCAGTTAGCTCAGGGAAGTCAGTTATCCCATTTGATTGAAGCTATTGAGAATGACAAGGTAAGTAGTGATTTTACTCA
AATCGCCTTGGTTATTGATGGATTTACCCGTTTTTCTGCTGAGGAAGAGCGGATTGTGGACTTACTTCATGCCAAGGGTG
TTGAGATTGTTATTGGGGCTTATGTTAGTAAGAAAGCCTATACCAGTCCATTCTCTGAAGGCAATCTCTATCAAGCCAGT
GTGGAGTTTCTCCATCATCTAGCCTTTAAATACCAAACACCTGCCCAGGATTATTCTCAAACTCATGAGAAGATGGATAG
CTTTGACAAGGCCTCTCGTTTGCTGGAGTCTTCTTATGACTTTTCAGAACTTTCCTTGGAAATTGATGATAGGGACCGTG
AAAACTTACAAATCTGGTCTTGCTTGACGCAAAAGGAGGAGTTGGAGCTAGTAGCTCGGAGCATTCGTCAGAAATTACAT
GAGAACTCAAATCTGAGTTACAAGCATTTTCGTATTCTCTTGGGGGATGTGGCTTCTTATCAGTTATCTCTTAAAACCAT
TTTTGACCAGTACCAGATTCCTTTCTATCTTGGTAGAAGCGAATCCATGGCCCACCACCCTTTGACACAGTTTGTCGAGT
CTATTTTAGCTTTGAAACGCTATCGTTTCCGTCAGGAGGATTTGATTAACCTTCTCAGAACAGGTTTGTATACCGACCTT
AGTCAGGCTGATATTGATGCTTTTGAGCAATATATCCGCTATCTTGGTATCAATGGCTTGCCAGCCTTTCAGCAAGCCTT
CACCAAATCCCACCATGGAAAATTTGATTTAGGGCGTTTAAATGCTCTTCGTCTGCGTATTGTAACACCTCTTGAGACTC
TCTTTGCCAGCCGAAAACAAAAGGCTGAAAATCTCTTACAAAAGTGGAATGTCTTTCTAAAAGAAGGAGCAGTAACTAAG
CAGTTACAAGATTTGACAGCTACTATGAAAGTTCTTGAACAGGAAAGACAAGCCGAAGTTTGGAAGGCATTCTGCCATGT
TTTAGAACAATTTGCGACTGTTTTTGCTGGTTCACAGGTTAGTCTAGAGGACTTTCTAGCCCTGCTCCATTCTGGAATGA
GTCTATCTCAATACCGTACCATTCCAGCGACAGTGAACACCGTTCTGGTGCAGAGTTATGATTTGATTGCGCCACTGACA
GCTGACTTTGTCTATGCCATTGGGCTGACTCAGGACAATTTACCAAAAATCGCGCAAAATACCAGTCTTTTAACTGATGA
AGAAAGACAAAGCTTAAACCAAGCGACAGAAGAAGGCGTTCAATTGCTGATTGCCAGCAGTGAAAACCTCAAGAAAAATC
GCTACACTATGCTTTCCTTGGTCAATTCTGCGCGTAAGCAGTTGATTCTGTCATCTCCAAGCCTTTTTAATGAAAGTGAA
AGCAAGGAGTCAGCTTATCTTCAAGAGCTGGTGAGTTTTGGATTTAGTCGAAGAGAAAAGAGAATGAGCCATAAAAATCT
TAGCAAAGAAGATATAGGTTCATATCACAGCCTTTTGTCCAGTCTGGTTGCCTATCACCAGCAGGGCGAGATGAGTGAGA
CTGAGCAAGATTTGACATTTATTAAAGTTCTAGCGCGTGTCATGGGTAAAAAACTAGACCAGCAAGGTCTGGAAAATCCA
GCCCTCCCAACCAGCCCAAGCAGTAAACCCTTAGCAAAGGACACCTTACAGGCTCTCTATCCTGCTGAACAGGAATTTTA
CCTGTCTACCTCTGGTTTGACGGAGTTTTACCGCAATGAATACAGTTATTTCCTCCGTTATGTTCTAGGCTTGCAAGAAG
AATTACGCCTGCGTCCTGATGCCCGCAGTCACGGAAATTTCTTGCACCGTATCTTTGAACGCGCCTTACAGTTGCCTAAC
GAAGATTCCTTTGACAAACGTTTAGAACAAGCTATCCAAGAAACCAGTCAAGAACGTGAATTTGAGGCTATTTATCAGGA
AAGTTTGGAAGCCCAGTTTACCAAGGAAGTTTTGCTTGATGTTGCACGAACGACTGGCCACATTCTCCGTCATAATCCAG
CCATCGAAACCATCAAAGAGGAATCGAATTTCGGTGGGAAAGAGCAAGCCTTTATTCAATTGGACAATGGTCGCAGTGTT
TTTGTACGAGGTAAGGTTGACCGCATTGACCGATTGAAAGCTGATGGAGCGATTGGAGTGGTAGACTACAAATCCAGTCT
GACTCAGTTCCAATTTCCTCATTTCTTTAATGGGCTTAATTCCCAACTGCCAACCTATTTAGCTGCCTTAAAAAGAGAAG
GGGAGCAGAACTTTTTTGGTGCCATGTACTTGGAAATGGCTGAACCAGTCCAATCTTTGATGGCCGTTAAAAGTCTGGCA
GGTGCAGTAGTAGAAGCTAGCAAGTCTATGAAATACCAAGGGCTCTTTTTAGAAAAAGAAAGCAGTCATTTAGGTGAATT
TTACAATAAAAATAAGGCCAATCAGCTGACGGATGAGGAATTCCAGCTTCTACTGGACTACAATGCCCATCTTTACAAGA
AAGCGGCTGAGAAGATTTTAGAAGGCCAATTCGCCATTAATCCTTATACTGAAAACGGCAGAAGTATTGCACCGTATGTT
CAGCAACATCAAGCCATTACAGGATTTGAAGCTAATTACCATTTAGGCCAAGCCCGTTTCCTAGAAAAGTTGGACTTAGC
TGATGGCAAACGTCTGGTCGGAGAAAAACTCAAGCAAGCTTGGTTTGAAAAAATAAGAGAGGAGTTGAATCGATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(748-1030)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

93.492

100

0.935