Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   RDV54_RS02680 Genome accession   NZ_CP133471
Coordinates   533647..534111 (+) Length   154 a.a.
NCBI ID   WP_001135768.1    Uniprot ID   A4L7L7
Organism   Streptococcus mitis strain LMG 14557     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 528647..539111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV54_RS02650 (RDV54_02650) dhaL 529451..530026 (+) 576 WP_001100267.1 dihydroxyacetone kinase subunit DhaL -
  RDV54_RS02655 (RDV54_02655) dhaM 530026..530400 (+) 375 WP_000534739.1 dihydroxyacetone kinase phosphoryl donor subunit DhaM -
  RDV54_RS02660 (RDV54_02660) - 530996..531997 (+) 1002 WP_000344676.1 hypothetical protein -
  RDV54_RS02665 (RDV54_02665) - 531994..532191 (+) 198 WP_000658758.1 hypothetical protein -
  RDV54_RS02670 (RDV54_02670) - 532230..532922 (+) 693 WP_000120611.1 YjjG family noncanonical pyrimidine nucleotidase -
  RDV54_RS02675 (RDV54_02675) - 532984..533637 (+) 654 WP_000401338.1 uracil-DNA glycosylase -
  RDV54_RS02680 (RDV54_02680) mutX 533647..534111 (+) 465 WP_001135768.1 NUDIX hydrolase Machinery gene
  RDV54_RS02685 (RDV54_02685) - 534124..535392 (+) 1269 WP_000924473.1 dihydroorotase -
  RDV54_RS02690 (RDV54_02690) - 535434..536795 (+) 1362 WP_000283632.1 MATE family efflux transporter -
  RDV54_RS02695 (RDV54_02695) - 536949..537917 (+) 969 WP_000025262.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  RDV54_RS02700 (RDV54_02700) - 537933..538925 (+) 993 WP_000448715.1 alpha-ketoacid dehydrogenase subunit beta -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17812.16 Da        Isoelectric Point: 4.2287

>NTDB_id=799425 RDV54_RS02680 WP_001135768.1 533647..534111(+) (mutX) [Streptococcus mitis strain LMG 14557]
MPQLATICYIDNGKELLMLHRNKKPNDVHEGKWIGVGGKLERGETPQECAAREILEETGLKAKPVLKGVITFPEFTPDLD
WYTYVFKVTEFEGDLIDCNEGTLEWVPYDEVLSKPTWEGDHTFVEWLLEDKPFFSAKFVYDGDKLLDTQVDFYE

Nucleotide


Download         Length: 465 bp        

>NTDB_id=799425 RDV54_RS02680 WP_001135768.1 533647..534111(+) (mutX) [Streptococcus mitis strain LMG 14557]
ATGCCTCAGTTAGCGACGATTTGCTACATTGATAACGGGAAAGAACTGCTTATGCTCCACCGTAATAAGAAGCCAAATGA
TGTTCATGAAGGAAAATGGATTGGTGTGGGTGGTAAGCTAGAGCGAGGAGAGACACCTCAGGAATGCGCGGCGCGTGAAA
TCCTTGAGGAAACAGGGCTCAAAGCCAAGCCAGTTCTAAAAGGTGTCATCACTTTTCCTGAATTTACACCAGATTTAGAC
TGGTACACCTATGTTTTTAAGGTGACGGAGTTCGAGGGGGATTTGATTGACTGCAATGAGGGGACGCTGGAATGGGTTCC
TTATGATGAGGTTTTGAGCAAGCCGACTTGGGAAGGTGACCATACCTTTGTTGAGTGGCTTTTAGAGGACAAACCCTTCT
TTTCAGCTAAGTTTGTTTATGATGGGGATAAATTGTTGGATACCCAAGTTGATTTTTATGAATAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(2-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A4L7L7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

98.701

100

0.987