Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   P0M04_RS03265 Genome accession   NZ_CP119520
Coordinates   750754..751617 (+) Length   287 a.a.
NCBI ID   WP_259448779.1    Uniprot ID   -
Organism   Telluria mixta strain ACM 1762     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 745754..756617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P0M04_RS03255 (P0M04_03255) - 747590..750076 (+) 2487 WP_259448781.1 chemotaxis protein CheW -
  P0M04_RS03260 (P0M04_03260) - 750098..750556 (-) 459 WP_259448780.1 RidA family protein -
  P0M04_RS03265 (P0M04_03265) pilD 750754..751617 (+) 864 WP_259448779.1 A24 family peptidase Machinery gene
  P0M04_RS03270 (P0M04_03270) coaE 751643..752308 (+) 666 WP_259448778.1 dephospho-CoA kinase -
  P0M04_RS03275 (P0M04_03275) zapD 752382..753137 (+) 756 WP_259448777.1 cell division protein ZapD -
  P0M04_RS03280 (P0M04_03280) yacG 753147..753329 (+) 183 WP_259448776.1 DNA gyrase inhibitor YacG -
  P0M04_RS03285 (P0M04_03285) - 753350..753730 (+) 381 WP_259448775.1 tautomerase family protein -
  P0M04_RS03290 (P0M04_03290) yidD 753727..754287 (+) 561 WP_259448774.1 membrane protein insertion efficiency factor YidD -
  P0M04_RS03295 (P0M04_03295) - 754208..754621 (-) 414 WP_259448773.1 NUDIX domain-containing protein -
  P0M04_RS03300 (P0M04_03300) - 754614..755519 (-) 906 WP_259448772.1 ATP-binding protein -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 31069.04 Da        Isoelectric Point: 8.1184

>NTDB_id=799412 P0M04_RS03265 WP_259448779.1 750754..751617(+) (pilD) [Telluria mixta strain ACM 1762]
METLLFAAPATLAATLAALLFGLLIGSFLNVVVYRLPVMAQRELDNYIAHEAGKDLPHPDRFNLMVPRSACPHCGHQITA
LENIPIVSWLVLRGKCSACKAPISPRYPIVEAVTGLLSAVVIWHLGSGWLGLASLAFAYFLIAMTLIDYDTKTLPDDLTY
PLLWLGLLVNLNGTIVPLRDAVIGAMAGYLALWAVYWLFKLATGKEGMGYGDFKLLAALGAWMGWAMLPTIIILSSVVGA
IVGISLIVFARRDRNNPIPFGPYLAAAGMIALLYGIPLTRYAQGFLV

Nucleotide


Download         Length: 864 bp        

>NTDB_id=799412 P0M04_RS03265 WP_259448779.1 750754..751617(+) (pilD) [Telluria mixta strain ACM 1762]
ATGGAAACCCTGCTCTTCGCCGCCCCGGCGACCCTCGCCGCGACCCTTGCCGCCTTGCTGTTCGGCCTGTTGATCGGCAG
CTTCCTGAACGTGGTCGTGTACCGCCTGCCCGTGATGGCGCAGCGCGAACTCGACAACTACATCGCGCACGAAGCCGGCA
AGGACCTGCCGCACCCCGACCGCTTCAACCTGATGGTGCCCCGCTCCGCCTGCCCGCACTGCGGCCACCAGATCACGGCG
TTGGAAAACATCCCGATCGTCAGCTGGCTGGTCCTGCGCGGCAAATGCAGCGCGTGCAAGGCGCCGATTTCTCCCCGTTA
TCCGATCGTGGAAGCCGTCACGGGCCTGCTGTCGGCCGTCGTGATCTGGCATTTGGGCAGCGGCTGGCTGGGTCTCGCGA
GCCTCGCGTTCGCGTACTTCCTCATCGCGATGACCTTGATCGATTACGACACGAAAACGCTGCCGGACGATCTCACCTAC
CCGCTCCTGTGGCTGGGCCTGCTCGTCAACCTGAACGGCACCATCGTCCCGCTGCGCGACGCCGTGATCGGCGCCATGGC
CGGCTACCTGGCGTTGTGGGCCGTGTACTGGCTGTTCAAGCTCGCCACCGGCAAGGAAGGCATGGGCTACGGCGACTTCA
AGCTGCTCGCCGCGCTGGGCGCGTGGATGGGCTGGGCGATGCTGCCGACCATTATCATCCTGTCGTCCGTCGTCGGCGCC
ATCGTTGGCATCTCGCTGATCGTGTTCGCCCGCCGCGACCGCAATAATCCGATTCCCTTCGGACCTTATCTCGCCGCGGC
TGGTATGATCGCACTCTTGTACGGAATACCACTCACCCGCTACGCGCAGGGTTTCCTGGTCTAG

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-124)

Type IV leader peptidase family (Peptidase_A24)

(136-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

56.87

91.289

0.519
  pilD Vibrio campbellii strain DS40M4

52.874

90.941

0.481
  pilD Acinetobacter baumannii D1279779

49.434

92.334

0.456
  pilD Acinetobacter nosocomialis M2

49.057

92.334

0.453
  pilD Neisseria gonorrhoeae MS11

49.43

91.638

0.453