Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   RDV54_RS01585 Genome accession   NZ_CP133471
Coordinates   305228..305869 (+) Length   213 a.a.
NCBI ID   WP_000151481.1    Uniprot ID   -
Organism   Streptococcus mitis strain LMG 14557     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 300228..310869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV54_RS01555 (RDV54_01555) - 300460..300825 (+) 366 WP_000981959.1 hypothetical protein -
  RDV54_RS01560 (RDV54_01560) - 300815..301105 (+) 291 WP_001080187.1 DUF5960 family protein -
  RDV54_RS01565 (RDV54_01565) - 301400..301759 (+) 360 WP_000529547.1 SAG1252 family conjugative relaxosome accessory protein -
  RDV54_RS01570 (RDV54_01570) mobC 301769..302134 (+) 366 WP_000263039.1 plasmid mobilization relaxosome protein MobC -
  RDV54_RS01575 (RDV54_01575) - 302121..303983 (+) 1863 WP_000261797.1 SAG1250 family conjugative relaxase -
  RDV54_RS01580 (RDV54_01580) - 304027..304875 (-) 849 WP_000837479.1 helix-turn-helix domain-containing protein -
  RDV54_RS01585 (RDV54_01585) comA 305228..305869 (+) 642 WP_000151481.1 ATP-binding cassette domain-containing protein Regulator
  RDV54_RS01590 (RDV54_01590) - 305882..306052 (+) 171 WP_000711945.1 hypothetical protein -
  RDV54_RS01595 (RDV54_01595) gdhA 306333..307679 (-) 1347 WP_000199543.1 NADP-specific glutamate dehydrogenase -
  RDV54_RS01600 (RDV54_01600) - 307920..308855 (+) 936 WP_000255154.1 dihydroorotate oxidase -
  RDV54_RS01605 (RDV54_01605) holA 308889..309926 (+) 1038 WP_078228374.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23620.43 Da        Isoelectric Point: 9.4746

>NTDB_id=799412 RDV54_RS01585 WP_000151481.1 305228..305869(+) (comA) [Streptococcus mitis strain LMG 14557]
MTIESGQRIALVGQPGSGKSTLSKIPSELYKIDTGKVLFDGVNINQIDKKILSQNLGVVPQDSFLLNRSILDNKTLKHEV
TSQKIEEVCKAVQVYDEIIAMPMKFNTIISEMGSNISGGQRQWIALARALINNLSIVILDEATSTLDTINEERITKYIKS
QGCTQIIVAHRLSTIKDANIIFVMKGGKIVESGNHKYLMALGGEYYSLYTKRK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=799412 RDV54_RS01585 WP_000151481.1 305228..305869(+) (comA) [Streptococcus mitis strain LMG 14557]
TTGACTATTGAGTCAGGACAGAGAATTGCACTAGTCGGTCAACCGGGGTCAGGAAAAAGTACGTTATCAAAAATACCATC
AGAATTATATAAGATTGATACAGGAAAAGTTTTATTTGATGGTGTAAATATTAATCAAATAGATAAAAAAATATTAAGTC
AAAATTTAGGAGTAGTTCCACAGGATTCATTTTTATTGAACAGAAGTATTCTTGATAATAAAACTTTAAAGCACGAAGTT
ACTTCACAAAAGATAGAGGAAGTTTGTAAAGCAGTTCAAGTCTATGATGAAATCATAGCTATGCCGATGAAATTTAATAC
TATCATCTCAGAGATGGGTTCAAATATTTCAGGTGGTCAAAGACAATGGATAGCACTGGCACGTGCATTAATAAATAATC
TTAGTATTGTAATTTTAGATGAAGCAACTAGTACATTAGACACTATTAATGAGGAAAGAATAACAAAGTATATAAAAAGT
CAGGGCTGTACTCAAATAATTGTAGCTCATAGATTGTCAACGATTAAGGATGCGAATATTATTTTTGTAATGAAAGGTGG
TAAGATTGTTGAGTCAGGAAATCATAAGTACTTAATGGCTCTTGGTGGAGAGTACTACAGCTTATATACAAAAAGGAAAT
GA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(1-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis NCTC 12261

42.381

98.592

0.418
  comA Streptococcus mitis SK321

41.905

98.592

0.413
  comA/nlmT Streptococcus mutans UA159

41.038

99.531

0.408
  comA Streptococcus gordonii str. Challis substr. CH1

40.566

99.531

0.404
  comA Streptococcus pneumoniae D39

40.952

98.592

0.404
  comA Streptococcus pneumoniae R6

40.952

98.592

0.404
  comA Streptococcus pneumoniae Rx1

40.952

98.592

0.404
  comA Streptococcus pneumoniae TIGR4

40

98.592

0.394
  rcrQ Streptococcus mutans UA159

37.089

100

0.371