Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   RDV54_RS00880 Genome accession   NZ_CP133471
Coordinates   155964..156641 (+) Length   225 a.a.
NCBI ID   WP_000548991.1    Uniprot ID   A0A501PEF7
Organism   Streptococcus mitis strain LMG 14557     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 150964..161641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV54_RS00855 (RDV54_00855) - 151442..152092 (-) 651 WP_000188514.1 metal-dependent transcriptional regulator -
  RDV54_RS00860 (RDV54_00860) - 152204..153046 (+) 843 WP_000160949.1 metallophosphoesterase family protein -
  RDV54_RS00865 (RDV54_00865) - 153122..153559 (+) 438 WP_001166788.1 Rrf2 family transcriptional regulator -
  RDV54_RS00870 (RDV54_00870) - 153628..154647 (+) 1020 WP_000281605.1 YdcF family protein -
  RDV54_RS00875 (RDV54_00875) - 154735..155808 (-) 1074 WP_001273807.1 DUF2974 domain-containing protein -
  RDV54_RS00880 (RDV54_00880) braR 155964..156641 (+) 678 WP_000548991.1 response regulator transcription factor Regulator
  RDV54_RS00885 (RDV54_00885) - 156634..157608 (+) 975 WP_000887959.1 sensor histidine kinase -
  RDV54_RS00890 (RDV54_00890) - 158044..159555 (+) 1512 WP_000938204.1 ATP-binding cassette domain-containing protein -
  RDV54_RS00895 (RDV54_00895) - 159846..160895 (+) 1050 WP_000147504.1 DUF389 domain-containing protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25936.11 Da        Isoelectric Point: 5.1362

>NTDB_id=799406 RDV54_RS00880 WP_000548991.1 155964..156641(+) (braR) [Streptococcus mitis strain LMG 14557]
MHKILLVEDDQVIRQQVGKMLSEWGFEVVLVEDFMEVLSLFVQSEPHLVLMDIGLPLFNGYHWCQEIRKISKVPIMFLSS
RDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYEFGRDESLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQIL
RVLFEHAGNIVARDDLMRELWNSDFFIDDNTLSVNVARLRKKLEEQGLVGFIETKKGIGYGLKHA

Nucleotide


Download         Length: 678 bp        

>NTDB_id=799406 RDV54_RS00880 WP_000548991.1 155964..156641(+) (braR) [Streptococcus mitis strain LMG 14557]
ATGCACAAGATTTTATTAGTAGAAGATGATCAGGTTATTCGTCAACAGGTCGGGAAAATGCTCTCTGAATGGGGATTTGA
AGTGGTGCTGGTAGAAGACTTTATGGAAGTTTTGAGTCTTTTTGTCCAGTCGGAGCCTCATCTGGTCCTCATGGATATTG
GACTGCCCTTGTTTAATGGCTATCACTGGTGTCAGGAAATTCGCAAGATTTCCAAGGTCCCCATCATGTTTCTGTCTTCG
AGAGACCAGGCTATGGATATTGTCATGGCAATCAATATGGGGGCGGATGACTTTGTGACCAAGCCTTTTGACCAGCAGGT
TCTTTTAGCCAAAGTTCAGGGCTTGTTGCGACGTTCATATGAGTTTGGGCGTGACGAGAGTTTACTGGAATATGCTGGTG
TTATCCTCAATACCAAATCAATGGATTTACATTATCAAGGGCAAGTCTTGAATTTGACCAAGAACGAATTCCAGATTTTA
CGAGTTTTGTTTGAGCATGCGGGCAATATTGTAGCGCGTGACGATCTCATGCGGGAACTTTGGAACAGTGACTTTTTCAT
TGATGACAATACCCTATCTGTTAATGTGGCTCGATTGCGTAAAAAGTTGGAAGAGCAGGGCTTGGTAGGATTTATCGAAA
CCAAGAAAGGGATAGGGTACGGATTAAAGCATGCTTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A501PEF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

49.083

96.889

0.476
  vicR Streptococcus mutans UA159

35.319

100

0.369