Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   RDV53_RS05250 Genome accession   NZ_CP133470
Coordinates   1065461..1066699 (+) Length   412 a.a.
NCBI ID   WP_005695225.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae ATCC 33392 strain DSM 8978     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1060461..1071699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV53_RS05230 (RDV53_05230) - 1061762..1062595 (-) 834 WP_005695221.1 neutral zinc metallopeptidase -
  RDV53_RS05235 (RDV53_05235) lysM 1062773..1063213 (+) 441 WP_005695222.1 peptidoglycan-binding protein LysM -
  RDV53_RS05240 (RDV53_05240) tig 1063427..1064725 (+) 1299 WP_005695223.1 trigger factor -
  RDV53_RS05245 (RDV53_05245) clpP 1064870..1065451 (+) 582 WP_005695224.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  RDV53_RS05250 (RDV53_05250) clpX 1065461..1066699 (+) 1239 WP_005695225.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  RDV53_RS05255 (RDV53_05255) secE 1066821..1067237 (+) 417 WP_005695226.1 preprotein translocase subunit SecE -
  RDV53_RS05260 (RDV53_05260) nusG 1067239..1067796 (+) 558 WP_005695227.1 transcription termination/antitermination protein NusG -
  RDV53_RS05265 (RDV53_05265) rplK 1067968..1068396 (+) 429 WP_005695228.1 50S ribosomal protein L11 -
  RDV53_RS05270 (RDV53_05270) rplA 1068401..1069090 (+) 690 WP_005695230.1 50S ribosomal protein L1 -
  RDV53_RS05275 (RDV53_05275) - 1069246..1070391 (-) 1146 WP_005695231.1 iron-containing alcohol dehydrogenase -
  RDV53_RS05280 (RDV53_05280) - 1070440..1071621 (-) 1182 WP_005695232.1 glutathionylspermidine synthase family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45696.12 Da        Isoelectric Point: 4.5935

>NTDB_id=799374 RDV53_RS05250 WP_005695225.1 1065461..1066699(+) (clpX) [Haemophilus parainfluenzae ATCC 33392 strain DSM 8978]
MTTNDNDLHCSFCGREKSEVGKLIAGTDGYICNECIELCHSMLEDSGEIETPSELTVEEKLPTPHEIRAHLDDYVIGQDY
AKKVLSVAVYNHYKRLRTNHQSNDVELGKSNILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQ
KLLQNCDYDTEKAEQGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEMLKVDTSKI
LFICGGAFAGLDKIIGKRTQTDTGIGFDAKVEKEEEKENLSELFRQVEPDDLMKFGLIPEFIGRLPMIAPLSELDEEALI
QILTQPKNALTKQYQALFGLEDVELEFTPEALKAMAKKALERKTGARGLRSIVEAVLLDTMYDLPSIENLKKVIVDEETI
VDNKPPKLEYKN

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=799374 RDV53_RS05250 WP_005695225.1 1065461..1066699(+) (clpX) [Haemophilus parainfluenzae ATCC 33392 strain DSM 8978]
ATGACAACAAATGATAACGATCTTCACTGTTCTTTCTGCGGAAGAGAAAAAAGTGAAGTAGGTAAATTAATTGCGGGTAC
AGATGGTTATATTTGTAACGAGTGTATCGAGCTTTGCCACAGTATGTTAGAAGACAGTGGTGAAATCGAAACGCCTAGCG
AACTGACAGTTGAAGAAAAATTACCAACCCCACACGAAATTCGCGCTCACTTAGATGATTATGTAATTGGGCAAGATTAT
GCGAAAAAAGTCTTGTCAGTGGCGGTTTACAATCACTATAAACGCTTACGCACGAATCACCAAAGCAATGATGTGGAATT
AGGTAAAAGTAACATCTTGTTAATTGGTCCAACAGGTAGCGGTAAAACCTTATTAGCACAAACCTTGGCGCGTCGTTTGA
ATGTGCCTTTTGCTATGGCCGATGCGACGACGTTAACTGAAGCCGGTTATGTGGGCGAAGATGTGGAAAATGTTCTGCAA
AAATTATTGCAAAACTGCGATTACGATACAGAAAAAGCAGAGCAGGGCATTATCTATATTGATGAAATTGATAAAATTAG
CCGTAAATCAGAAGGCGCATCTATTACTCGAGATGTGTCTGGTGAAGGTGTGCAACAAGCCTTGTTGAAATTAATTGAAG
GCACTATTGCGTCTGTACCGCCACAAGGTGGACGTAAACATCCTCAACAAGAAATGTTGAAAGTGGACACCTCAAAAATC
CTCTTTATTTGTGGTGGGGCATTTGCTGGCTTAGATAAAATCATCGGTAAGCGTACACAAACTGATACTGGAATTGGTTT
TGATGCGAAAGTAGAGAAGGAAGAAGAGAAAGAAAATCTTTCTGAATTATTCCGTCAAGTTGAGCCAGATGATTTAATGA
AATTTGGTTTGATTCCAGAATTTATTGGTCGTCTTCCAATGATTGCGCCATTAAGCGAATTAGATGAAGAGGCGTTGATT
CAGATCCTGACTCAACCGAAAAATGCACTGACCAAACAATATCAAGCATTATTTGGCTTAGAAGATGTAGAGCTTGAATT
TACACCAGAAGCATTAAAAGCGATGGCGAAAAAAGCCCTTGAACGTAAAACCGGTGCACGTGGTTTACGCTCAATCGTTG
AAGCTGTATTGTTAGATACGATGTATGATTTACCTTCAATCGAAAACTTGAAAAAAGTGATTGTGGATGAAGAAACGATC
GTTGATAACAAACCACCAAAACTCGAATATAAAAATTAA

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(109-308)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(314-391)

ClpX C4-type zinc finger (zf-C4_ClpX)

(8-45)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

58.191

99.272

0.578
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.388

96.845

0.536