Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   RDV53_RS02905 Genome accession   NZ_CP133470
Coordinates   594959..595474 (-) Length   171 a.a.
NCBI ID   WP_005694713.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae ATCC 33392 strain DSM 8978     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 589959..600474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV53_RS02880 (RDV53_02880) nfuA 591244..591828 (-) 585 WP_005694707.1 Fe-S biogenesis protein NfuA -
  RDV53_RS02885 (RDV53_02885) - 591944..592633 (-) 690 WP_032822376.1 ComF family protein -
  RDV53_RS02890 (RDV53_02890) comE 592653..594035 (-) 1383 WP_005694710.1 type IV pilus secretin PilQ Machinery gene
  RDV53_RS02895 (RDV53_02895) - 594037..594420 (-) 384 WP_005694711.1 hypothetical protein -
  RDV53_RS02900 (RDV53_02900) comC 594420..594962 (-) 543 WP_005694712.1 hypothetical protein Machinery gene
  RDV53_RS02905 (RDV53_02905) comB 594959..595474 (-) 516 WP_005694713.1 hypothetical protein Machinery gene
  RDV53_RS02910 (RDV53_02910) comA 595458..596306 (-) 849 WP_005694714.1 pilus assembly protein PilM Machinery gene
  RDV53_RS02915 (RDV53_02915) - 596406..599018 (+) 2613 WP_005694715.1 penicillin-binding protein 1A -
  RDV53_RS02920 (RDV53_02920) - 599143..600447 (-) 1305 WP_115353608.1 MFS transporter -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 20345.50 Da        Isoelectric Point: 6.1353

>NTDB_id=799361 RDV53_RS02905 WP_005694713.1 594959..595474(-) (comB) [Haemophilus parainfluenzae ATCC 33392 strain DSM 8978]
MMLSLNLLPWRLEQHQKAFKRFMWQGLIWLACSVLIVFGLSHLNEQQVYVLNQTKEKLAQITNQVHKKHIQVQQLQSNLK
EMNELTEMDTEYVYRMLNLLSELPLQQGELDVFTLNAKQVALSGMTENQQEFEAIHQFLKHHFTEVNLTKFQPVQQQLFF
QFDIQLLESEQ

Nucleotide


Download         Length: 516 bp        

>NTDB_id=799361 RDV53_RS02905 WP_005694713.1 594959..595474(-) (comB) [Haemophilus parainfluenzae ATCC 33392 strain DSM 8978]
ATGATGTTAAGCCTTAATTTATTGCCTTGGCGCTTAGAACAACATCAAAAGGCTTTTAAGCGCTTTATGTGGCAAGGTTT
AATTTGGCTAGCTTGCTCAGTGTTGATTGTCTTTGGCTTGAGTCATCTTAATGAACAACAAGTGTATGTGCTAAATCAGA
CAAAAGAAAAACTCGCACAAATCACCAATCAAGTCCATAAGAAACATATTCAAGTTCAGCAACTACAAAGTAACCTGAAA
GAAATGAATGAGCTGACAGAAATGGATACAGAATATGTGTATCGGATGCTTAACTTATTAAGTGAGTTACCATTACAACA
AGGTGAGTTAGATGTATTTACGCTCAATGCTAAGCAAGTTGCCCTTTCTGGCATGACGGAAAATCAACAAGAATTTGAAG
CGATACATCAATTTCTTAAACATCATTTTACAGAGGTTAATTTGACCAAGTTTCAACCAGTGCAACAACAGTTATTCTTT
CAATTTGATATTCAGTTATTGGAGTCTGAGCAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Haemophilus influenzae 86-028NP

41.718

95.322

0.398
  comB Haemophilus influenzae Rd KW20

41.104

95.322

0.392