Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   RDV53_RS02910 Genome accession   NZ_CP133470
Coordinates   595458..596306 (-) Length   282 a.a.
NCBI ID   WP_005694714.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae ATCC 33392 strain DSM 8978     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 590458..601306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV53_RS02880 (RDV53_02880) nfuA 591244..591828 (-) 585 WP_005694707.1 Fe-S biogenesis protein NfuA -
  RDV53_RS02885 (RDV53_02885) - 591944..592633 (-) 690 WP_032822376.1 ComF family protein -
  RDV53_RS02890 (RDV53_02890) comE 592653..594035 (-) 1383 WP_005694710.1 type IV pilus secretin PilQ Machinery gene
  RDV53_RS02895 (RDV53_02895) - 594037..594420 (-) 384 WP_005694711.1 hypothetical protein -
  RDV53_RS02900 (RDV53_02900) comC 594420..594962 (-) 543 WP_005694712.1 hypothetical protein Machinery gene
  RDV53_RS02905 (RDV53_02905) comB 594959..595474 (-) 516 WP_005694713.1 hypothetical protein Machinery gene
  RDV53_RS02910 (RDV53_02910) comA 595458..596306 (-) 849 WP_005694714.1 pilus assembly protein PilM Machinery gene
  RDV53_RS02915 (RDV53_02915) - 596406..599018 (+) 2613 WP_005694715.1 penicillin-binding protein 1A -
  RDV53_RS02920 (RDV53_02920) - 599143..600447 (-) 1305 WP_115353608.1 MFS transporter -
  RDV53_RS02925 (RDV53_02925) thiE 600444..601121 (-) 678 WP_005694717.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 282 a.a.        Molecular weight: 32771.79 Da        Isoelectric Point: 6.2302

>NTDB_id=799362 RDV53_RS02910 WP_005694714.1 595458..596306(-) (comA) [Haemophilus parainfluenzae ATCC 33392 strain DSM 8978]
MEIAHRKQRKQQIGVSKQQDNLYFVWLDAFHKVQSICLNGQQKDIFSHLLPHLPQKTSQCCFIGAISPHLTWSKTLILPQ
TLNVQECEQQCRFILQKELPIPLDELWFDYLTTPLKQGFRLDITAIRKESANAELVKYLPLKLTALDLLNHSILRAFYVI
LGQEPINTLFLYQDQQGCLAVCERLQQRQVLQSQSDLSELYQQFIQRFPETIEQVYVYQTPDILNSRTIESLPQDWQRIE
TDLPFIALGNALWQTDLKLVDLSSKTPALLPPINRESDDVKP

Nucleotide


Download         Length: 849 bp        

>NTDB_id=799362 RDV53_RS02910 WP_005694714.1 595458..596306(-) (comA) [Haemophilus parainfluenzae ATCC 33392 strain DSM 8978]
ATGGAAATTGCCCATAGAAAGCAGCGAAAACAACAAATTGGTGTGAGTAAACAACAAGATAACCTCTATTTCGTTTGGCT
AGATGCATTCCACAAAGTTCAATCTATTTGCTTAAATGGACAGCAAAAAGACATTTTTTCCCATTTATTACCTCATTTAC
CACAAAAAACTAGCCAATGTTGTTTTATCGGAGCCATTTCACCCCATTTAACTTGGTCTAAAACGCTTATTTTACCGCAA
ACTCTCAATGTCCAGGAATGTGAACAACAATGTCGTTTCATTTTGCAAAAAGAATTACCGATTCCGTTGGATGAATTATG
GTTTGATTATCTGACCACGCCATTAAAACAAGGTTTTCGTTTGGATATCACGGCGATTCGAAAAGAAAGTGCCAATGCAG
AATTAGTAAAATATTTGCCGCTAAAATTAACCGCACTTGATTTACTGAATCACAGTATTTTACGCGCATTTTATGTCATT
TTAGGGCAAGAGCCGATTAACACTTTATTTTTATATCAAGATCAACAAGGTTGTCTCGCCGTTTGTGAACGCTTACAACA
ACGACAAGTTTTGCAATCTCAAAGTGATTTATCTGAGCTTTATCAACAATTTATCCAACGCTTTCCCGAAACGATAGAAC
AGGTTTATGTGTATCAAACGCCAGATATATTGAATTCACGCACGATAGAATCACTGCCTCAGGATTGGCAACGCATCGAA
ACAGATTTACCTTTCATCGCTTTAGGTAATGCACTGTGGCAAACCGATTTAAAGCTAGTGGATTTATCCTCAAAAACACC
CGCACTTTTGCCTCCAATTAATCGGGAGAGTGATGATGTTAAGCCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae 86-028NP

49.81

93.262

0.465
  comA Haemophilus influenzae Rd KW20

49.43

93.262

0.461