Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   RBG92_RS08995 Genome accession   NZ_CP133453
Coordinates   1833932..1834669 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain CREC8     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1828932..1839669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBG92_RS08980 (RBG92_08980) clpC 1829386..1831959 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  RBG92_RS08985 (RBG92_08985) yfiH 1832089..1832820 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  RBG92_RS08990 (RBG92_08990) rluD 1832817..1833797 (-) 981 WP_000079099.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RBG92_RS08995 (RBG92_08995) comL 1833932..1834669 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  RBG92_RS09000 (RBG92_09000) raiA 1834940..1835281 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  RBG92_RS09005 (RBG92_09005) pheL 1835385..1835432 (+) 48 WP_010723158.1 phe operon leader peptide -
  RBG92_RS09010 (RBG92_09010) pheA 1835531..1836691 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  RBG92_RS09015 (RBG92_09015) tyrA 1836734..1837855 (-) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  RBG92_RS09020 (RBG92_09020) aroF 1837866..1838936 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  RBG92_RS09025 (RBG92_09025) yfiL 1839146..1839511 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=799212 RBG92_RS08995 WP_000197686.1 1833932..1834669(+) (comL) [Escherichia coli strain CREC8]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=799212 RBG92_RS08995 WP_000197686.1 1833932..1834669(+) (comL) [Escherichia coli strain CREC8]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376