Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   RBG92_RS05320 Genome accession   NZ_CP133453
Coordinates   1063106..1063762 (-) Length   218 a.a.
NCBI ID   WP_308942908.1    Uniprot ID   -
Organism   Escherichia coli strain CREC8     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1058106..1068762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBG92_RS05290 (RBG92_05290) yecA 1059357..1060022 (-) 666 WP_000847880.1 UPF0149 family protein YecA -
  RBG92_RS05310 (RBG92_05310) pgsA 1060672..1061220 (-) 549 WP_074500281.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RBG92_RS05315 (RBG92_05315) uvrC 1061277..1063109 (-) 1833 WP_001283424.1 excinuclease ABC subunit UvrC Machinery gene
  RBG92_RS05320 (RBG92_05320) letA 1063106..1063762 (-) 657 WP_308942908.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  RBG92_RS05325 (RBG92_05325) - 1063904..1063975 (+) 72 Protein_1046 transcriptional regulator -
  RBG92_RS05330 (RBG92_05330) yecU 1064058..1064234 (+) 177 WP_001307856.1 protein YecU -
  RBG92_RS05335 (RBG92_05335) yecF 1064221..1064445 (+) 225 WP_000106474.1 DUF2594 family protein YecF -
  RBG92_RS05340 (RBG92_05340) sdiA 1064512..1065234 (-) 723 WP_087760829.1 transcriptional regulator SdiA -
  RBG92_RS05345 (RBG92_05345) tcyN 1065464..1066216 (-) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  RBG92_RS05350 (RBG92_05350) tcyL 1066213..1066881 (-) 669 WP_001158220.1 cystine ABC transporter permease -
  RBG92_RS05355 (RBG92_05355) dcyD 1066896..1067882 (-) 987 WP_001128215.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23952.75 Da        Isoelectric Point: 6.9614

>NTDB_id=799199 RBG92_RS05320 WP_308942908.1 1063106..1063762(-) (letA) [Escherichia coli strain CREC8]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAFAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=799199 RBG92_RS05320 WP_308942908.1 1063106..1063762(-) (letA) [Escherichia coli strain CREC8]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGTCGGGCAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCTTTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.242

94.954

0.477
  letA Legionella pneumophila strain ERS1305867

50.242

94.954

0.477