Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   RDU00_RS20520 Genome accession   NZ_CP133449
Coordinates   3904377..3905171 (-) Length   264 a.a.
NCBI ID   WP_003242676.1    Uniprot ID   C0SP91
Organism   Bacillus subtilis strain KK195     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3899377..3910171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDU00_RS20495 (RDU00_20475) rocD 3899827..3901032 (-) 1206 WP_003242970.1 ornithine aminotransferase -
  RDU00_RS20500 (RDU00_20480) rocR 3901273..3902658 (+) 1386 WP_003244510.1 arginine utilization regulatory protein RocR -
  RDU00_RS20505 (RDU00_20485) - 3902640..3902828 (-) 189 Protein_3983 ATP-binding protein -
  RDU00_RS20510 (RDU00_20490) - 3902945..3903073 (-) 129 WP_003242634.1 hypothetical protein -
  RDU00_RS20515 (RDU00_20495) htrA 3903093..3904295 (-) 1203 WP_009969578.1 serine protease HtrC Regulator
  RDU00_RS20520 (RDU00_20500) vicX 3904377..3905171 (-) 795 WP_003242676.1 MBL fold metallo-hydrolase Regulator
  RDU00_RS20525 (RDU00_20505) walI 3905193..3906035 (-) 843 WP_003244037.1 WalRK two-component regulatory system regulator WalI -
  RDU00_RS20530 (RDU00_20510) walH 3906022..3907389 (-) 1368 WP_064635423.1 WalRK two-component regulatory system regulator WalH -
  RDU00_RS20535 (RDU00_20515) walK 3907379..3909214 (-) 1836 WP_009968432.1 cell wall metabolism sensor histidine kinase WalK -
  RDU00_RS20540 (RDU00_20520) walR 3909222..3909929 (-) 708 WP_003244363.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29256.25 Da        Isoelectric Point: 5.8036

>NTDB_id=799185 RDU00_RS20520 WP_003242676.1 3904377..3905171(-) (vicX) [Bacillus subtilis strain KK195]
MSLQFSVLASGSTGNAFYLETEDHAFLVDAGLSGKAMDGLMAQIGRKLDDVDGIFVTHEHSDHIKGLGVVARKYKLPIYA
NEKTWKAMENQIGKIDTDQKFVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYSGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASK
GFVTGETFDLYDTDPKKATPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=799185 RDU00_RS20520 WP_003242676.1 3904377..3905171(-) (vicX) [Bacillus subtilis strain KK195]
ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTCGAAACAGAGGATCACGCATTTTT
AGTGGACGCCGGTTTGAGCGGAAAAGCCATGGATGGGCTGATGGCGCAGATCGGGCGTAAGCTGGATGATGTAGACGGCA
TTTTTGTGACGCATGAGCATAGTGACCATATTAAGGGCCTTGGTGTCGTCGCCAGAAAGTACAAGCTTCCGATCTATGCG
AATGAGAAGACTTGGAAAGCGATGGAGAATCAAATCGGCAAAATTGACACCGATCAAAAGTTTGTATTTCCAATGGAGAC
GGTGAAGTCGTTCGGCGGACTTGATGTTGAATCGTTTGGCGTTTCCCACGATGCGGCGGAACCGATGTTTTATGTATTCC
ATTATAGCGGCCGAAAGCTCGCGTTAATGACAGATACGGGATATGTCAGCGACCGGATGAAAGGCATTATCCGTTCAGCG
AATGTATTTGTGTTTGAAAGCAATCACGATGTCGGTATGCTGCAAATGGGAAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGTGACGTCGGGCACGTGTCAAATGAAGATGCTGCCTTGGCGATGACGGATGTCATTGGCGATGAGACGTCTCGTA
TTTACCTGGCGCATTTGAGCCAGGACAACAACATGAAGGAGCTGGCAAGAATGTCTGTGCAGCAGACATTGGCTTCTAAA
GGATTTGTGACGGGTGAGACATTTGACTTATACGACACCGATCCGAAGAAGGCCACTCCGCTTTGCGCTGTATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C0SP91

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.435

99.242

0.53