Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RDU00_RS16715 Genome accession   NZ_CP133449
Coordinates   3149948..3150583 (-) Length   211 a.a.
NCBI ID   WP_003243201.1    Uniprot ID   O32197
Organism   Bacillus subtilis strain KK195     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3144948..3155583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDU00_RS16695 (RDU00_16685) yvzF 3146005..3146190 (-) 186 WP_003244599.1 YvzF family protein -
  RDU00_RS16700 (RDU00_16690) gerAA 3146308..3147756 (+) 1449 WP_010886610.1 spore germination receptor protein GerAA -
  RDU00_RS16705 (RDU00_16695) gerAB 3147725..3148822 (+) 1098 WP_009968145.1 spore germination receptor protein GerAB -
  RDU00_RS16710 (RDU00_16700) gerAC 3148819..3149940 (+) 1122 WP_009968146.1 spore germination receptor protein GerAC -
  RDU00_RS16715 (RDU00_16705) vraR 3149948..3150583 (-) 636 WP_003243201.1 two-component system response regulator LiaR Regulator
  RDU00_RS16720 (RDU00_16710) liaS 3150561..3151643 (-) 1083 WP_003244464.1 two-component system sensor histidine kinase LiaS -
  RDU00_RS16725 (RDU00_16715) liaF 3151640..3152365 (-) 726 WP_003242605.1 LiaRS two-component regulatory system accessory protein LiaF -
  RDU00_RS16730 (RDU00_16720) liaG 3152399..3153271 (-) 873 WP_003244420.1 DUF4097 domain-containing protein -
  RDU00_RS16735 (RDU00_16725) liaH 3153372..3154049 (-) 678 WP_003243047.1 stress responsive protein LiaH -
  RDU00_RS16740 (RDU00_16730) liaI 3154076..3154456 (-) 381 WP_003243447.1 cell envelope stress-induced membrane anchor protein LiaI -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23124.76 Da        Isoelectric Point: 4.9049

>NTDB_id=799164 RDU00_RS16715 WP_003243201.1 3149948..3150583(-) (vraR) [Bacillus subtilis strain KK195]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAVELSPDVILMDLVMEGMDGIEATKQICRELSDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENALPHESLTKRELEILCL
IAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVN

Nucleotide


Download         Length: 636 bp        

>NTDB_id=799164 RDU00_RS16715 WP_003243201.1 3149948..3150583(-) (vraR) [Bacillus subtilis strain KK195]
GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCTCGCGGCTTTTTTGGAGGCGCAGCCCGATAT
TGAAGTCATCGGCGAAGCATCGGACGGCAGCGAAGGTGTTCGGCTTGCTGTGGAACTGTCGCCTGATGTCATTTTAATGG
ACCTTGTCATGGAGGGCATGGATGGCATTGAAGCTACAAAGCAAATTTGCCGGGAGCTTTCCGACCCGAAAATTATTGTG
CTCACTAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTGGCGCGCTCAGCTATCTGTTGAAAACCTCAAA
AGCGGCAGAAATCGCCGATGCCATCCGCGCCGCAAGCAAGGGAGAGCCGAAGCTGGAGTCAAAAGTGGCGGGAAAAGTAT
TATCCAGGCTGCGCCACTCAGGTGAAAACGCGCTCCCGCATGAATCGCTTACAAAACGGGAGCTCGAAATACTCTGCCTG
ATCGCAGAAGGAAAGACAAACAAAGAAATAGGCGAGGAACTGTTTATTACGATTAAAACAGTCAAAACACATATTACGAA
TATTTTATCAAAGCTGGATGTCAGTGACCGGACGCAGGCGGCGGTGTACGCACACCGAAATCATCTCGTGAATTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O32197

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.857

99.526

0.526
  degU Bacillus subtilis subsp. subtilis str. 168

38.565

100

0.408