Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   PXW01_RS05555 Genome accession   NZ_CP119420
Coordinates   1110790..1112601 (+) Length   603 a.a.
NCBI ID   WP_338428261.1    Uniprot ID   -
Organism   Faecalibacterium taiwanense strain CYL33     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1105790..1117601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXW01_RS05535 (PXW01_01840) - 1106058..1106714 (-) 657 WP_338428265.1 sortase -
  PXW01_RS05540 (PXW01_01835) - 1106795..1107778 (-) 984 WP_338428264.1 Na/Pi symporter -
  PXW01_RS05545 (PXW01_01830) - 1108022..1108486 (+) 465 WP_346352682.1 MarR family transcriptional regulator -
  PXW01_RS05550 (PXW01_01825) - 1108483..1110788 (+) 2306 Protein_1077 ABC transporter ATP-binding protein -
  PXW01_RS05555 (PXW01_01820) rcrQ 1110790..1112601 (+) 1812 WP_338428261.1 ABC transporter ATP-binding protein Regulator
  PXW01_RS05560 (PXW01_01815) - 1112815..1113738 (-) 924 WP_338428260.1 LysR family transcriptional regulator -
  PXW01_RS05565 (PXW01_01810) - 1113905..1115935 (+) 2031 WP_338428259.1 FAD-binding protein -
  PXW01_RS05570 (PXW01_01805) - 1116137..1117057 (+) 921 WP_207699006.1 MoxR family ATPase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 66812.19 Da        Isoelectric Point: 6.7645

>NTDB_id=799149 PXW01_RS05555 WP_338428261.1 1110790..1112601(+) (rcrQ) [Faecalibacterium taiwanense strain CYL33]
MPRPGRMTTERAKDFKGTLLQLVRTLGRYRLSLVTAIVFAILSTIFNIAGPKVLAKATTALATGWIAKLRGTGSIDFVYI
GRILLFLLGMYLLSSAFSFIQGWLMTGLSQKVCYDFRRQISEKINRLPLAYFEKRTVGEVLSRITNDVDTLGQSLNQSIT
QLITSVTTMIGVLVMMLSISPKMTLIALLILPVSLVLVLIVVKFSQKYFKAQQAILGVVNGQVEEVYSGHNVVKAFNREA
VVLNDFNAANDKLYESAWKSQFLSGLMMPIMNFVGNLGYVAVAIVGSIFAANGTITIGDIQAFIQYVKNFTQPIQQLSQV
SNMLQSMAAAAERVFEFLNEPEEDQQADPARRADPGCINGQVTFSHVRFGYTPDKTVIRDFSCEVKPGQKVAIVGPTGAG
KTTMVKLLMRFYDVDSGSITLNGHDVRDFDRSALREGFGMVLQDTWLFKGTIMENIRYGRLDATDEEVIAAAKAANADHF
IRTLPGGYQMELNEDASNVSQGQKQLLTIARTILADNRILILDEATSSVDTRTEQRIQTAMDRLMEGRTSFVIAHRLSTI
RDADLILVMRDGDIVEQGTHDQLIEAGGFYADLYNSQFEDVVE

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=799149 PXW01_RS05555 WP_338428261.1 1110790..1112601(+) (rcrQ) [Faecalibacterium taiwanense strain CYL33]
ATGCCAAGACCCGGACGCATGACGACCGAACGCGCCAAGGACTTCAAGGGCACCCTGCTGCAGCTTGTGCGCACCCTTGG
CCGCTACCGCCTTTCGCTCGTTACCGCCATTGTATTTGCCATTCTTTCTACCATCTTCAACATTGCAGGCCCCAAGGTGC
TGGCAAAGGCCACCACGGCTCTTGCCACCGGCTGGATCGCCAAGCTGCGCGGCACCGGCAGCATCGACTTTGTGTATATC
GGCCGCATCCTGCTGTTTTTGCTGGGCATGTACCTGCTGAGCAGCGCCTTCAGCTTTATTCAGGGCTGGCTCATGACCGG
CCTTTCGCAGAAGGTGTGCTACGACTTCCGCCGTCAGATCAGCGAAAAGATCAACCGCCTGCCCCTTGCCTACTTTGAAA
AGCGCACCGTGGGCGAGGTGCTGTCCCGCATCACCAACGATGTGGACACGCTGGGCCAGAGCCTGAACCAGAGCATCACC
CAGCTCATCACCAGTGTGACCACCATGATCGGCGTGCTGGTCATGATGCTGTCCATCAGCCCGAAGATGACCCTGATCGC
CCTGCTGATCCTGCCCGTCTCGCTGGTGCTGGTGCTCATCGTGGTCAAGTTCAGCCAGAAATACTTCAAGGCCCAGCAGG
CCATCCTGGGCGTTGTAAACGGTCAGGTGGAAGAAGTCTACTCCGGCCACAACGTGGTCAAAGCCTTCAATCGCGAGGCC
GTGGTGCTGAACGACTTCAACGCCGCCAACGATAAGCTGTACGAATCCGCATGGAAGAGCCAGTTTCTCTCCGGCCTGAT
GATGCCCATTATGAACTTTGTGGGCAATCTGGGCTACGTGGCAGTGGCCATCGTGGGCAGCATTTTTGCGGCAAACGGCA
CCATTACCATCGGTGACATTCAGGCCTTCATCCAGTACGTCAAGAACTTCACCCAGCCCATCCAGCAGCTTTCTCAGGTG
TCCAACATGCTGCAGAGCATGGCCGCTGCCGCTGAGCGGGTGTTCGAGTTTCTGAACGAGCCGGAAGAGGATCAGCAGGC
AGACCCGGCCCGCCGGGCCGACCCCGGCTGCATCAACGGTCAGGTGACATTCAGTCATGTCCGCTTCGGCTACACCCCGG
ACAAGACCGTCATCCGCGATTTCAGCTGTGAGGTCAAGCCCGGCCAGAAGGTGGCTATCGTCGGCCCTACCGGCGCGGGC
AAAACTACCATGGTCAAGCTGCTCATGCGCTTCTATGATGTGGATTCCGGTTCCATCACCCTGAATGGCCACGATGTGCG
TGACTTTGACCGCAGCGCTCTGCGCGAGGGCTTCGGCATGGTGCTGCAGGACACATGGCTGTTCAAGGGCACCATCATGG
AGAACATCCGCTATGGCCGTCTGGATGCTACCGACGAAGAAGTGATCGCCGCCGCCAAGGCTGCCAACGCCGACCACTTC
ATCCGCACCCTGCCCGGCGGCTACCAGATGGAGCTGAACGAAGACGCTTCCAACGTGAGTCAGGGCCAGAAGCAGCTGCT
CACCATCGCCCGCACCATTCTGGCAGATAACCGCATCCTGATTTTGGACGAGGCCACCAGCAGTGTGGATACCCGCACCG
AGCAGCGCATCCAAACCGCCATGGACCGCCTGATGGAGGGCCGCACCAGCTTTGTGATCGCACACCGTCTTTCCACCATC
CGGGATGCCGACCTCATCCTTGTGATGCGAGATGGCGACATTGTGGAGCAGGGCACCCACGACCAGCTGATCGAAGCAGG
CGGCTTCTACGCCGACCTGTACAACAGCCAGTTCGAGGACGTGGTGGAGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(379-527)

ABC transporter transmembrane region (ABC_membrane)

(34-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.767

97.347

0.494