Detailed information NTG0799114

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: P0M34_RS21235
• Genome accession: NZ_CP119408
• Coordinates: 4309345..4310145 (+)
• Length: 266 a.a.
• NCBI ID: WP_032414527.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain NW202109
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4304345..4315145

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P0M34_RS21200 (P0M34_21200)	gspH	4304501..4305016 (+)	516	WP_029602499.1	type II secretion system minor pseudopilin GspH	-
P0M34_RS21205 (P0M34_21205)	gspI	4305013..4305378 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
P0M34_RS21210 (P0M34_21210)	gspJ	4305375..4305971 (+)	597	WP_012737414.1	type II secretion system minor pseudopilin GspJ	-
P0M34_RS21215 (P0M34_21215)	gspK	4305968..4306954 (+)	987	WP_004177385.1	type II secretion system minor pseudopilin GspK	-
P0M34_RS21220 (P0M34_21220)	gspL	4306941..4308134 (+)	1194	WP_071033945.1	type II secretion system protein GspL	-
P0M34_RS21225 (P0M34_21225)	-	4308127..4308612 (+)	486	WP_004151943.1	type II secretion system protein M	-
P0M34_RS21230 (P0M34_21230)	-	4308602..4309348 (+)	747	WP_004145897.1	type II secretion system protein N	-
P0M34_RS21235 (P0M34_21235)	pilD	4309345..4310145 (+)	801	WP_032414527.1	A24 family peptidase	Machinery gene
P0M34_RS21240 (P0M34_21240)	hrpB	4310193..4312622 (-)	2430	WP_202021331.1	ATP-dependent helicase HrpB	-
P0M34_RS21245 (P0M34_21245)	thpR	4312695..4313231 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
P0M34_RS21250 (P0M34_21250)	sfsA	4313231..4313947 (+)	717	WP_004177390.1	DNA/RNA nuclease SfsA	-
P0M34_RS21255 (P0M34_21255)	dksA	4314110..4314565 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=799114 P0M34_RS21235 WP_032414527.1 4309345..4310145(+) (pilD) [Klebsiella pneumoniae strain NW202109]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPISWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMI

Nucleotide

• Length: 801 bp

>NTDB_id=799114 P0M34_RS21235 WP_032414527.1 4309345..4310145(+) (pilD) [Klebsiella pneumoniae strain NW202109]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCTCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTATGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACTCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGATCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	46.545	100	0.481
pilD	Acinetobacter nosocomialis M2	46.388	98.872	0.459
pilD	Acinetobacter baumannii D1279779	45.627	98.872	0.451
pilD	Neisseria gonorrhoeae MS11	43.922	95.865	0.421