Detailed information NTG0798800

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PY254_RS16710
• Genome accession: NZ_CP119392
• Coordinates: 3740516..3741916 (+)
• Length: 466 a.a.
• NCBI ID: WP_281013183.1
• Uniprot ID: -
• Organism: Rhodanobacter sp. AS-Z3
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3735516..3746916

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PY254_RS16695 (PY254_16695)	sucD	3736462..3737334 (-)	873	WP_281013180.1	succinate--CoA ligase subunit alpha	-
PY254_RS16700 (PY254_16700)	sucC	3737346..3738635 (-)	1290	WP_281013181.1	ADP-forming succinate--CoA ligase subunit beta	-
PY254_RS16705 (PY254_16705)	-	3738809..3740458 (+)	1650	WP_281013182.1	HAMP domain-containing sensor histidine kinase	-
PY254_RS16710 (PY254_16710)	pilR	3740516..3741916 (+)	1401	WP_281013183.1	sigma-54 dependent transcriptional regulator	Regulator
PY254_RS16715 (PY254_16715)	-	3741941..3743482 (-)	1542	WP_281013184.1	response regulator	-
PY254_RS16720 (PY254_16720)	-	3743591..3744037 (-)	447	WP_281013185.1	response regulator	-
PY254_RS16725 (PY254_16725)	-	3744034..3745827 (-)	1794	WP_281013186.1	ATP-binding protein	-
PY254_RS16730 (PY254_16730)	-	3745824..3745961 (-)	138	WP_281013187.1	hypothetical protein	-

Sequence

Protein

• Length: 466 a.a.
• Molecular weight: 49921.96 Da
• Isoelectric Point: 5.7891

>NTDB_id=798800 PY254_RS16710 WP_281013183.1 3740516..3741916(+) (pilR) [Rhodanobacter sp. AS-Z3]
MTAQTVLVIDDERDIRELLTITLGRMDLQVDAVGTVGDARRALAERTYDLCFTDMRLPDGNGQEVIELIAAEHPDTPVAM
ITAYGNVDAAVNALKAGAFDFVSKPVDIQMLRGLVRTALRLAEEKRNGGGAATHGDTGNRLIGDSAAMQQVRATIGKLAR
NQAPVYIAGESGVGKELVARLIHEQGPRASGPFVPVNCGAIPSELMESEFFGHRKGSFTGAGADKEGLFQAAQGGTLFLD
EVAELPLHMQVKLLRAIQEKAVRPIGGRDEVPVDVRILSATHKNLGQLVEQGQFRQDLFYRINVIELRVPPLRERRGDVP
QLSTFILKALAGKSGEGIGQLAPAARDALEAYDFPGNVRELENVLERAMAMCDGNTIDAADLMLPQRGARLGSTDAPAAS
AAAANAAPPPTAAASDGGLDDYISNLERTAIVKALEESRYNKTAAARKLGITFRALRYKLKKLGID

Nucleotide

• Length: 1401 bp

>NTDB_id=798800 PY254_RS16710 WP_281013183.1 3740516..3741916(+) (pilR) [Rhodanobacter sp. AS-Z3]
ATGACAGCTCAGACCGTCCTGGTCATTGACGACGAACGCGACATCCGTGAACTGCTGACCATCACGTTGGGGCGAATGGA
TTTGCAGGTCGACGCCGTAGGTACGGTCGGCGATGCTCGCCGCGCCCTGGCCGAGCGCACGTACGACCTGTGCTTCACCG
ACATGCGGCTACCTGACGGCAACGGCCAGGAGGTGATCGAGCTGATCGCCGCTGAGCATCCGGACACGCCGGTGGCGATG
ATTACTGCCTACGGCAACGTCGATGCGGCAGTGAATGCGCTGAAAGCCGGCGCCTTCGACTTCGTCTCCAAGCCGGTCGA
CATACAGATGCTGCGCGGGCTGGTTCGCACTGCCTTGCGCCTGGCCGAGGAAAAGCGCAATGGTGGCGGTGCCGCGACCC
ACGGTGATACCGGTAATCGTCTGATTGGTGATTCGGCGGCGATGCAACAGGTACGCGCCACCATCGGCAAGCTGGCCCGC
AACCAGGCACCGGTTTATATCGCCGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCTTGATCCACGAGCAAGGCCC
GCGAGCGAGCGGCCCGTTCGTGCCGGTCAACTGTGGCGCGATTCCCTCCGAGCTGATGGAAAGCGAATTCTTCGGCCATC
GCAAAGGCAGCTTCACCGGCGCCGGTGCGGACAAGGAAGGCCTGTTCCAGGCGGCGCAGGGTGGCACGCTGTTTCTCGAC
GAGGTGGCCGAACTGCCGCTGCACATGCAGGTGAAACTGCTGCGCGCGATCCAGGAAAAGGCCGTGCGTCCGATCGGTGG
CCGCGACGAAGTTCCGGTGGACGTGCGCATCCTGTCCGCCACGCACAAGAATCTCGGCCAGCTGGTCGAGCAAGGCCAGT
TCCGCCAGGACTTGTTCTACCGCATCAACGTGATCGAACTGCGCGTGCCACCGTTGCGCGAACGTCGCGGTGACGTGCCG
CAATTGTCTACCTTCATCCTCAAGGCACTGGCCGGCAAGAGCGGCGAAGGCATCGGGCAGCTGGCGCCAGCCGCACGCGA
TGCGCTGGAAGCCTACGATTTCCCCGGCAACGTGCGCGAGCTGGAAAACGTGCTCGAGCGCGCCATGGCCATGTGCGACG
GCAACACGATCGATGCCGCCGACCTGATGCTGCCGCAGCGCGGCGCACGCCTCGGCAGTACCGATGCACCGGCGGCCAGT
GCAGCCGCCGCCAACGCTGCCCCGCCGCCCACCGCCGCCGCTTCCGATGGTGGTCTTGATGACTACATCAGCAACCTGGA
GCGCACCGCGATCGTCAAGGCGCTGGAAGAATCCCGCTACAACAAGACCGCGGCCGCCCGCAAACTCGGCATCACTTTCC
GCGCGTTGCGCTACAAGTTAAAGAAGCTCGGCATCGACTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (424-463)

• Sigma-54 interaction domain (Sigma54_activat) (141-307)

• Response regulator receiver domain (Response_reg) (6-114)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	61.159	100	0.612
pilR	Acinetobacter baumannii strain A118	47.835	99.142	0.474