Detailed information NTG0798745

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PZ739_RS03290
• Genome accession: NZ_CP119382
• Coordinates: 728105..728971 (-)
• Length: 288 a.a.
• NCBI ID: WP_275748891.1
• Uniprot ID: -
• Organism: Pseudomonas kermanshahensis strain Mr36
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 723105..733971

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PZ739_RS03255 (PZ739_03255)	-	723526..724821 (-)	1296	WP_275748883.1	NAD(P)/FAD-dependent oxidoreductase	-
PZ739_RS03260 (PZ739_03260)	-	724906..725079 (-)	174	WP_013970765.1	DUF3094 family protein	-
PZ739_RS03265 (PZ739_03265)	-	725212..725841 (-)	630	WP_013970766.1	DUF1780 domain-containing protein	-
PZ739_RS03270 (PZ739_03270)	-	725897..726328 (-)	432	WP_275748886.1	hypothetical protein	-
PZ739_RS03275 (PZ739_03275)	-	726439..727119 (+)	681	WP_275748887.1	energy-coupling factor ABC transporter permease	-
PZ739_RS03280 (PZ739_03280)	yacG	727285..727485 (-)	201	WP_275748889.1	DNA gyrase inhibitor YacG	-
PZ739_RS03285 (PZ739_03285)	coaE	727482..728105 (-)	624	WP_027594559.1	dephospho-CoA kinase	-
PZ739_RS03290 (PZ739_03290)	pilD	728105..728971 (-)	867	WP_275748891.1	prepilin peptidase	Machinery gene
PZ739_RS03295 (PZ739_03295)	-	728974..730182 (-)	1209	WP_275748893.1	type II secretion system F family protein	-
PZ739_RS03300 (PZ739_03300)	-	730400..730810 (+)	411	WP_275748895.1	pilin	-
PZ739_RS03310 (PZ739_03310)	-	731240..732157 (+)	918	Protein_635	Fic family protein	-
PZ739_RS03315 (PZ739_03315)	-	732500..732865 (-)	366	WP_186683265.1	molecular chaperone DnaJ	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31691.93 Da
• Isoelectric Point: 7.8056

>NTDB_id=798745 PZ739_RS03290 WP_275748891.1 728105..728971(-) (pilD) [Pseudomonas kermanshahensis strain Mr36]
MTLWTFLALQPPYFITLATVLGLLVGSFINVVVHRLPIMLDRQWQREAQEVLGLPVAEHARFDLCLPASQCTQCGHRIRA
WENVPILSYLALRGRCSACKQRISARYPLVELGCALLSMAVAWRCGASVEALALLPLTWGLLALSLIDHDQQLLPDAIVL
PGLWLGLIVNYCGVLVPLPDAVCGAVVGYLTLWTVYWLFKLVTGKEGMGYGDFKLLALIGAWGGWQVLPLTLLLSSVVGA
LMGVFLLRMRKHSIGMAMPFGPYLAIAGWIAVLWGDEIYASYLQLLGF

Nucleotide

• Length: 867 bp

>NTDB_id=798745 PZ739_RS03290 WP_275748891.1 728105..728971(-) (pilD) [Pseudomonas kermanshahensis strain Mr36]
ATGACTTTATGGACCTTCCTGGCTTTGCAGCCGCCTTACTTCATCACCTTGGCGACCGTGCTGGGGCTGTTGGTGGGCAG
TTTTATCAATGTGGTGGTGCACCGCCTGCCGATCATGCTGGACCGCCAATGGCAGCGTGAGGCACAGGAGGTGCTGGGGT
TGCCGGTGGCGGAGCATGCGCGTTTCGACCTGTGCCTGCCGGCCTCGCAGTGCACCCAGTGTGGGCATCGGATTCGGGCA
TGGGAAAACGTCCCCATCCTCAGTTACCTGGCGTTGCGTGGGCGTTGCTCTGCCTGCAAGCAGCGCATCAGCGCGCGTTA
TCCGTTGGTCGAGCTGGGTTGTGCGCTGCTGTCGATGGCGGTGGCCTGGCGCTGCGGGGCCAGTGTCGAGGCTCTGGCGC
TTCTGCCGCTGACGTGGGGTTTGCTGGCCCTGAGCTTGATCGACCATGACCAACAATTGCTGCCTGATGCGATCGTGCTG
CCGGGGCTGTGGCTTGGGTTGATCGTCAATTACTGCGGCGTATTGGTGCCCTTGCCCGATGCGGTGTGCGGTGCCGTGGT
CGGGTACCTCACCCTGTGGACGGTGTACTGGCTGTTCAAACTGGTGACCGGCAAGGAAGGCATGGGCTATGGCGACTTCA
AGCTGCTGGCACTGATCGGTGCCTGGGGTGGGTGGCAGGTGCTGCCGCTGACCTTGCTGCTGTCGTCAGTGGTGGGGGCG
TTGATGGGCGTGTTCCTGCTGCGGATGCGCAAGCATTCCATCGGCATGGCCATGCCGTTTGGCCCCTATCTGGCAATTGC
GGGGTGGATTGCTGTGCTCTGGGGTGATGAAATATACGCCTCTTACCTGCAACTGCTTGGATTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.65	95.139	0.51
pilD	Vibrio campbellii strain DS40M4	50	95.833	0.479
pilD	Acinetobacter baumannii D1279779	47.857	97.222	0.465
pilD	Acinetobacter nosocomialis M2	47.5	97.222	0.462
pilD	Neisseria gonorrhoeae MS11	47.636	95.486	0.455