Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   Q3101_RS08230 Genome accession   NZ_CP133215
Coordinates   1744132..1746276 (-) Length   714 a.a.
NCBI ID   WP_256037160.1    Uniprot ID   A0ABV5DGY2
Organism   Streptomyces sp. VNUA74     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1739132..1751276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3101_RS08215 (Q3101_08215) - 1739990..1740988 (-) 999 WP_107420112.1 TerC/Alx family metal homeostasis membrane protein -
  Q3101_RS08220 (Q3101_08220) - 1741245..1743284 (-) 2040 WP_308883011.1 TerD family protein -
  Q3101_RS08225 (Q3101_08225) - 1743410..1743988 (-) 579 WP_064727323.1 TerD family protein -
  Q3101_RS08230 (Q3101_08230) uvrB 1744132..1746276 (-) 2145 WP_256037160.1 excinuclease ABC subunit UvrB Machinery gene
  Q3101_RS08235 (Q3101_08235) - 1746317..1747195 (-) 879 WP_161346316.1 MHYT domain-containing protein -
  Q3101_RS08240 (Q3101_08240) - 1747484..1748377 (+) 894 WP_226487013.1 glycerophosphodiester phosphodiesterase family protein -
  Q3101_RS08245 (Q3101_08245) - 1748456..1749007 (+) 552 Protein_1633 methylated-DNA--[protein]-cysteine S-methyltransferase -
  Q3101_RS08250 (Q3101_08250) - 1749047..1749475 (-) 429 WP_226487014.1 VOC family protein -
  Q3101_RS08255 (Q3101_08255) - 1749612..1750520 (+) 909 WP_308883012.1 pseudouridine-5'-phosphate glycosidase -

Sequence

Protein


Download         Length: 714 a.a.        Molecular weight: 80211.80 Da        Isoelectric Point: 4.8854

>NTDB_id=798738 Q3101_RS08230 WP_256037160.1 1744132..1746276(-) (uvrB) [Streptomyces sp. VNUA74]
MRPVSQIERTVAPFEVVSPYQPNGDQPAAIAELARRVEAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVPLRVGEEHDRDELLRRFVDIQYTRNDMAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPVTG
EIISDDQHLYVFPASHYVAGPERMERAVNDIEKELAERLTELEKQGKLLEAQRLRMRTTYDLEMLRQIGSCSGVENYSMH
FDGRLPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQGRIGQTVYL
SATPGTYELSRSDGAVEQIIRPTGLVDPEVVVKSTEGQIDDLVHEIRKRTEKDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKITPAMEKAIDETNRRREKQVAFNRANGIDPQPLRKKINDIVAQIAREDVDTEQLLGSGYRQGKEGKGAKTPVPSLGG
QAAAGAKPAKGKGRSKETVPTDRPAAELSEQIEDLTNRMRAAAADLQFEIAARLRDEVSEMKKELRQMKEAGLA

Nucleotide


Download         Length: 2145 bp        

>NTDB_id=798738 Q3101_RS08230 WP_256037160.1 1744132..1746276(-) (uvrB) [Streptomyces sp. VNUA74]
ATGCGGCCCGTTTCCCAGATCGAACGCACGGTGGCGCCCTTCGAGGTCGTCAGCCCCTACCAGCCGAACGGCGACCAGCC
GGCGGCCATCGCCGAGCTGGCCCGGCGTGTCGAAGCAGGCGAGAAGGACGTCGTCCTGCTCGGCGCGACCGGCACCGGCA
AGTCCGCCACCACCGCGTGGATGATCGAGAAGCTCCAGCGGCCCACCCTGGTCATGGCGCCGAACAAGACCCTGGCCGCC
CAGCTGGCGAACGAGTTCCGCGAACTGCTGCCCAACAACGCGGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCCTACGTCCCGCAGTCGGACACCTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTGGAGCGCCTGCGCCACT
CCGCGACGAACTCCCTGCTCACCCGCCGAGACGTCGTCGTGGTCGCCTCCGTCTCCTGCATCTACGGCCTGGGCACCCCC
CAGGAGTACGTGGACCGCATGGTCCCCCTGAGGGTCGGTGAGGAACACGACCGGGACGAGCTGCTGCGCCGCTTCGTCGA
CATCCAGTACACGCGCAACGACATGGCCTTCACCCGCGGCACCTTCCGCGTGCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTCGCCGTCCGCATCGAGATGTTCGGTGACGAGATCGAGGCCCTGTCCACCCTCCACCCGGTCACCGGC
GAGATCATCAGCGACGACCAGCACCTGTACGTCTTCCCGGCCTCCCACTACGTCGCGGGCCCCGAGCGCATGGAGCGGGC
GGTCAACGACATCGAGAAGGAGCTCGCCGAGCGCCTGACCGAGCTGGAGAAGCAGGGCAAGCTCCTGGAGGCCCAGCGGC
TGCGCATGCGTACGACGTACGACCTGGAGATGCTCCGCCAGATCGGCAGCTGCTCCGGCGTGGAGAACTACTCGATGCAC
TTCGACGGCCGCCTCCCCGGCTCCCCGCCGAACACGCTTCTCGACTACTTCCCGGACGACTTCCTGCTCGTCATCGACGA
GTCGCACGTCACCGTGCCGCAGATCGGCGCCATGTACGAGGGCGACGCCTCCCGCAAGCGGACCCTGGTCGACCACGGCT
TCCGGCTGCCGTCCGCCCTCGACAACCGGCCGCTCAAGTGGGAGGAGTTCCAGGGGCGCATCGGGCAGACCGTCTACCTG
TCGGCCACGCCGGGGACCTACGAGCTCTCCCGGTCGGACGGCGCCGTGGAGCAGATCATCCGCCCCACCGGCCTCGTCGA
CCCGGAAGTCGTCGTCAAGTCCACCGAGGGCCAGATCGACGACCTGGTGCACGAAATCCGGAAGCGGACCGAGAAGGACG
AGCGCGTCCTGGTCACCACCCTCACCAAGAAGATGGCGGAGGACCTGACCGACTACTTCCTGGAACTGGGCATCCAGGTC
CGCTACCTGCACAGCGACGTCGACACCCTGCGCCGCGTCGAACTCCTGCGTGAACTGCGCGCGGGTGAGTACGACGTCCT
GGTGGGCATCAACCTGCTGCGCGAGGGCCTCGACCTGCCCGAGGTGTCCCTGGTGGCGATCCTGGACGCCGACAAGGAGG
GCTTCCTGCGCTCCGGCACCTCGCTGATCCAGACCATCGGCCGCGCGGCGCGCAACGTCTCCGGCCAGGTCCACATGTAC
GCCGACAAGATCACGCCGGCGATGGAGAAGGCGATCGACGAGACCAACCGCCGCCGCGAGAAGCAGGTCGCGTTCAACCG
GGCGAACGGCATCGACCCGCAGCCGCTCCGCAAGAAGATCAACGACATCGTCGCGCAGATCGCCCGCGAGGACGTCGACA
CCGAGCAGCTGCTCGGCTCGGGCTACCGCCAGGGGAAGGAGGGCAAGGGCGCCAAGACCCCCGTCCCCTCCCTCGGTGGC
CAAGCGGCCGCAGGGGCGAAGCCGGCCAAGGGCAAGGGCCGGAGCAAGGAGACGGTGCCCACCGACCGTCCCGCCGCGGA
GCTGTCCGAGCAGATCGAGGACCTCACCAACCGCATGCGGGCGGCCGCCGCCGACCTCCAGTTCGAGATCGCGGCCCGGC
TGCGCGACGAGGTGTCCGAGATGAAGAAGGAACTGCGTCAGATGAAGGAGGCGGGCCTGGCCTGA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(670-703)

Type III restriction enzyme, res subunit (ResIII)

(22-134)

UvrB interaction domain (UvrB_inter)

(169-257)

Ultra-violet resistance protein B (UvrB)

(559-600)

Helicase conserved C-terminal domain (Helicase_C)

(440-551)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.522

96.639

0.546
  uvrB Streptococcus pneumoniae R6

56.522

96.639

0.546
  uvrB Streptococcus pneumoniae D39

56.522

96.639

0.546