Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   Q3101_RS04850 Genome accession   NZ_CP133215
Coordinates   1034932..1035594 (+) Length   220 a.a.
NCBI ID   WP_226485190.1    Uniprot ID   A0ABV5DFB0
Organism   Streptomyces sp. VNUA74     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1029932..1040594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3101_RS04825 (Q3101_04825) mug 1030934..1031491 (+) 558 WP_079163803.1 G/U mismatch-specific DNA glycosylase -
  Q3101_RS04830 (Q3101_04830) - 1031504..1031947 (-) 444 WP_064726726.1 hypothetical protein -
  Q3101_RS04835 (Q3101_04835) - 1032006..1032731 (-) 726 WP_064726727.1 hypothetical protein -
  Q3101_RS04840 (Q3101_04840) - 1032734..1033654 (-) 921 WP_256031171.1 ABC transporter ATP-binding protein -
  Q3101_RS04845 (Q3101_04845) - 1033763..1034917 (+) 1155 WP_308882760.1 histidine kinase -
  Q3101_RS04850 (Q3101_04850) vraR 1034932..1035594 (+) 663 WP_226485190.1 response regulator transcription factor Regulator
  Q3101_RS04855 (Q3101_04855) - 1035694..1036848 (+) 1155 WP_079163435.1 ROK family transcriptional regulator -
  Q3101_RS04860 (Q3101_04860) - 1036883..1037644 (-) 762 WP_064726732.1 GntR family transcriptional regulator -
  Q3101_RS04865 (Q3101_04865) - 1037761..1038648 (-) 888 WP_161347092.1 RNA polymerase sigma-70 factor -
  Q3101_RS04870 (Q3101_04870) - 1038794..1039672 (+) 879 WP_308882761.1 alpha/beta fold hydrolase -
  Q3101_RS04875 (Q3101_04875) - 1039624..1040493 (-) 870 WP_064726735.1 triacylglycerol lipase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23554.11 Da        Isoelectric Point: 5.0025

>NTDB_id=798730 Q3101_RS04850 WP_226485190.1 1034932..1035594(+) (vraR) [Streptomyces sp. VNUA74]
MPVRVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAADGAAVVPLVRTLRPDVVAMDVRMPLLDGIEATRALLRTVADPPKI
LVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLIAEGDSLLFPASVRQLAAEYGDDGGNRAARATVERARLTER
EGEVLRLMSRGLSNAEIAARLVVGTETVKSHVSAVLAKLGARDRTQAVITAYESGFVAPG

Nucleotide


Download         Length: 663 bp        

>NTDB_id=798730 Q3101_RS04850 WP_226485190.1 1034932..1035594(+) (vraR) [Streptomyces sp. VNUA74]
ATGCCGGTCAGAGTGCTCCTCGTCGACGACGAACCCCTCGTACGCGCGGGTCTGCGGGCGGTATTGGAGGCGCAGCCGGA
CATCGAGGTGGTCGGGGAGGCCGCGGACGGGGCGGCGGTCGTGCCCCTGGTGCGCACCCTGCGGCCGGACGTGGTCGCCA
TGGACGTCCGGATGCCGCTGCTCGACGGCATCGAGGCCACCCGCGCGCTGCTGCGGACGGTGGCCGACCCGCCGAAGATC
CTCGTGGTGACGACCTTCGAGAACGACGAGTACGTGTACGAGGCGCTGCGCGCGGGCGCGGACGGGTTCCTGCTCAAGCG
CGCCCGGCCGGCCGAGATCGTGCACGCGGTACGGCTGATCGCCGAGGGCGATTCGCTGCTGTTCCCCGCCTCGGTGCGGC
AACTGGCCGCCGAGTACGGCGACGACGGCGGGAACCGGGCGGCCCGCGCCACGGTGGAACGGGCGCGGCTGACGGAGCGG
GAGGGCGAGGTGCTGCGGCTGATGTCGCGCGGGCTGTCCAACGCGGAGATCGCGGCGCGGCTGGTCGTCGGCACCGAGAC
GGTGAAGTCGCACGTGAGCGCGGTGCTGGCGAAGCTGGGGGCGCGGGACCGCACCCAGGCGGTGATCACGGCGTACGAGT
CGGGGTTCGTGGCACCCGGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(157-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.726

99.545

0.395
  degU Bacillus subtilis subsp. subtilis str. 168

36.607

100

0.373