Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   P1A16_RS05055 Genome accession   NZ_CP119344
Coordinates   1028680..1029666 (+) Length   328 a.a.
NCBI ID   WP_000959292.1    Uniprot ID   -
Organism   Staphylococcus aureus strain N29CSA11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1023680..1034666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1A16_RS05030 (P1A16_05030) opp4B 1023893..1024855 (+) 963 WP_000239820.1 oligopeptide ABC transporter permease -
  P1A16_RS05035 (P1A16_05035) opp4C 1024867..1025748 (+) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  P1A16_RS05040 (P1A16_05040) trpS 1025790..1026779 (-) 990 WP_031589556.1 tryptophan--tRNA ligase -
  P1A16_RS05045 (P1A16_05045) spxA 1027074..1027469 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  P1A16_RS05050 (P1A16_05050) mecA 1027840..1028559 (+) 720 WP_001217723.1 adaptor protein MecA -
  P1A16_RS05055 (P1A16_05055) coiA 1028680..1029666 (+) 987 WP_000959292.1 competence protein CoiA family protein Machinery gene
  P1A16_RS05060 (P1A16_05060) pepF 1029714..1031522 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  P1A16_RS05065 (P1A16_05065) yjbH 1031982..1032788 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  P1A16_RS05070 (P1A16_05070) - 1032811..1033176 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  P1A16_RS05075 (P1A16_05075) - 1033280..1033873 (-) 594 WP_000224611.1 CYTH domain-containing protein -
  P1A16_RS05080 (P1A16_05080) - 1034059..1034406 (+) 348 WP_031589545.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38884.55 Da        Isoelectric Point: 9.7683

>NTDB_id=798712 P1A16_RS05055 WP_000959292.1 1028680..1029666(+) (coiA) [Staphylococcus aureus strain N29CSA11]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGFKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=798712 P1A16_RS05055 WP_000959292.1 1028680..1029666(+) (coiA) [Staphylococcus aureus strain N29CSA11]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATTTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.39

100

0.994
  coiA Staphylococcus aureus N315

97.561

100

0.976