Detailed information NTG0079871

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: L6498_RS25275
• Genome accession: NZ_AP022907
• Coordinates: 4865040..4866389 (-)
• Length: 449 a.a.
• NCBI ID: WP_236803930.1
• Uniprot ID: -
• Organism: Bacillus cereus strain MRY14-0100
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4860040..4871389

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L6498_RS25255 (BCM0100_4969)	secA	4860362..4862869 (-)	2508	WP_000579383.1	preprotein translocase subunit SecA	-
L6498_RS25260 (BCM0100_4970)	raiA	4863146..4863688 (-)	543	WP_000671189.1	ribosome-associated translation inhibitor RaiA	-
L6498_RS25265 (BCM0100_4971)	cspC	4864012..4864209 (-)	198	WP_001990088.1	cold shock protein CspC	-
L6498_RS25270 (BCM0100_4972)	comFC	4864336..4865040 (-)	705	WP_041184339.1	comF operon protein ComFC	-
L6498_RS25275 (BCM0100_4973)	comFA	4865040..4866389 (-)	1350	WP_236803930.1	ATP-dependent helicase ComFA	Machinery gene
L6498_RS25280 (BCM0100_4974)	-	4866517..4867827 (-)	1311	WP_000734330.1	C40 family peptidase	-
L6498_RS25285 (BCM0100_4975)	-	4868081..4868395 (-)	315	WP_000400857.1	helix-turn-helix domain-containing protein	-
L6498_RS25290 (BCM0100_4976)	-	4868569..4869411 (-)	843	WP_000844766.1	DegV family protein	-
L6498_RS25295 (BCM0100_4977)	-	4869651..4870286 (+)	636	WP_000926684.1	YigZ family protein	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 51296.97 Da
• Isoelectric Point: 9.7834

>NTDB_id=79871 L6498_RS25275 WP_236803930.1 4865040..4866389(-) (comFA) [Bacillus cereus strain MRY14-0100]
MVAGKQLLLEELSSDLRRELSDSKKKGEIICVQGVIKKASKYICQRCGNIEQRLFASFLCKRCNKVCTYCRKCITMGRVS
ECAVLVRGIHERKGERELHSLQWKGSLSLGQELAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGIEEALQKGERVCIAT
PRTDVVLELVPRLQEVFPSINVAALYGGSVDREKDAALVVATTHQLLRYYRAFHVMIVDEIDAFPYHADQMLQYAVQQAM
KERAARIYLTATPDEKWKRNFRRGKQKGIIVSGRYHRHPLPVPLFSWCGNWKKSLHHKKIPRVLLQWLKMYVNKKYPIFL
FVPHVRYIEEMSLLLKGLDHRIDGVHAEDPMRKEKVAAFRKGDIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEEPYGEVVYFHYGKTESMVRAKRHIQSMNKSAKEQGLID

Nucleotide

• Length: 1350 bp

>NTDB_id=79871 L6498_RS25275 WP_236803930.1 4865040..4866389(-) (comFA) [Bacillus cereus strain MRY14-0100]
ATGGTTGCTGGAAAGCAGTTACTATTAGAAGAACTCTCTTCAGATTTACGGAGAGAATTAAGTGATTCGAAAAAGAAGGG
AGAGATCATATGTGTACAAGGTGTAATAAAGAAGGCTTCTAAATATATATGTCAGCGCTGCGGGAATATAGAGCAGCGGC
TATTTGCATCATTTTTATGTAAAAGGTGCAATAAAGTATGTACGTATTGCCGCAAGTGTATAACGATGGGGAGAGTTAGT
GAATGTGCTGTACTTGTTCGTGGGATTCACGAAAGAAAAGGAGAAAGGGAATTACATTCGTTACAGTGGAAAGGGAGTTT
GTCTCTTGGTCAGGAGTTGGCGGCGCAAGGTGTTATAGAAGCTATTAAGCAGAAAGAATCTTTTTTTATTTGGGCTGTGT
GCGGGGCCGGAAAAACAGAAATGTTATTTTACGGTATAGAAGAGGCACTTCAAAAAGGAGAAAGAGTGTGTATCGCAACA
CCAAGGACGGACGTTGTACTGGAATTAGTACCGAGATTACAAGAAGTGTTTCCAAGTATAAATGTAGCTGCTTTATACGG
AGGGAGTGTAGATCGTGAAAAAGATGCAGCGTTAGTCGTTGCAACGACTCACCAACTGTTACGTTACTATAGAGCATTTC
ATGTGATGATTGTAGATGAGATTGATGCCTTCCCGTATCATGCGGATCAAATGTTACAGTATGCAGTGCAGCAAGCGATG
AAAGAGAGAGCGGCGCGTATTTATTTAACTGCAACCCCTGATGAAAAGTGGAAGCGCAATTTCAGAAGAGGGAAACAAAA
AGGTATCATTGTCTCTGGACGATACCATCGTCATCCGTTACCAGTTCCTCTATTTAGTTGGTGCGGAAATTGGAAGAAAA
GCCTCCATCATAAAAAAATTCCTCGTGTGTTACTACAATGGTTAAAAATGTACGTAAACAAAAAATACCCTATTTTTTTA
TTTGTTCCTCATGTGCGATATATAGAAGAAATGAGCCTGTTATTGAAAGGGTTGGATCATAGAATCGATGGCGTACATGC
AGAAGATCCGATGAGAAAGGAAAAAGTGGCAGCGTTTAGAAAGGGAGACATTCCGTTATTAGTTACAACGACAATTTTAG
AAAGAGGGGTAACTGTGAAGAACTTACAAGTGGCTGTGTTAGGGGCTGAAGAAGAAATATTTTCAGAAAGTGCGCTCGTA
CAAATTGCAGGCCGAGCAGGTCGTAGTTTTGAAGAACCGTATGGTGAGGTTGTTTATTTTCACTACGGCAAGACAGAGTC
GATGGTACGTGCGAAAAGACATATTCAAAGTATGAACAAAAGTGCGAAAGAACAAGGATTAATTGATTAA

Domains

Predicted by InterproScan.

• Type III restriction enzyme, res subunit (ResIII) (108-254)

• Helicase conserved C-terminal domain (Helicase_C) (312-408)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	51.843	96.659	0.501
comFA	Latilactobacillus sakei subsp. sakei 23K	40.75	89.087	0.363