Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   P1A14_RS08270 Genome accession   NZ_CP119338
Coordinates   1703967..1704653 (-) Length   228 a.a.
NCBI ID   WP_072361794.1    Uniprot ID   -
Organism   Staphylococcus aureus strain N09HSA11     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1698967..1709653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1A14_RS08250 (P1A14_08250) rpsT 1699881..1700132 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  P1A14_RS08255 (P1A14_08255) holA 1700177..1701151 (-) 975 WP_031587652.1 DNA polymerase III subunit delta -
  P1A14_RS08260 (P1A14_08260) comEC 1701208..1703409 (-) 2202 WP_025174327.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  P1A14_RS08265 (P1A14_08265) - 1703414..1703875 (-) 462 WP_000439693.1 ComE operon protein 2 -
  P1A14_RS08270 (P1A14_08270) comEA 1703967..1704653 (-) 687 WP_072361794.1 ComEA family DNA-binding protein Machinery gene
  P1A14_RS08275 (P1A14_08275) - 1704693..1705409 (-) 717 WP_000084822.1 class I SAM-dependent methyltransferase -
  P1A14_RS08280 (P1A14_08280) rsfS 1705412..1705765 (-) 354 WP_001088020.1 ribosome silencing factor -
  P1A14_RS08285 (P1A14_08285) yqeK 1705766..1706350 (-) 585 WP_001019326.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  P1A14_RS08290 (P1A14_08290) nadD 1706340..1706909 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  P1A14_RS08295 (P1A14_08295) yhbY 1706912..1707202 (-) 291 WP_000627815.1 ribosome assembly RNA-binding protein YhbY -
  P1A14_RS08300 (P1A14_08300) aroE 1707206..1708012 (-) 807 WP_000666761.1 shikimate dehydrogenase -
  P1A14_RS08305 (P1A14_08305) - 1708026..1708259 (-) 234 Protein_1634 ribosome biogenesis GTPase YqeH -
  P1A14_RS08310 (P1A14_08310) yqeH 1708289..1709389 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25863.49 Da        Isoelectric Point: 9.3305

>NTDB_id=798602 P1A14_RS08270 WP_072361794.1 1703967..1704653(-) (comEA) [Staphylococcus aureus strain N09HSA11]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=798602 P1A14_RS08270 WP_072361794.1 1703967..1704653(-) (comEA) [Staphylococcus aureus strain N09HSA11]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGAAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.678

99.561

0.982
  comEA Staphylococcus aureus N315

97.797

99.561

0.974