Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   MT340_RS08950 Genome accession   NZ_CP119327
Coordinates   1805331..1805915 (+) Length   194 a.a.
NCBI ID   WP_243589644.1    Uniprot ID   -
Organism   Staphylococcus sp. NRL 16/872     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1800331..1810915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MT340_RS08925 (MT340_008925) - 1801132..1802499 (-) 1368 WP_243603773.1 isochorismate synthase -
  MT340_RS08930 (MT340_008930) - 1802679..1803617 (+) 939 WP_243589641.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  MT340_RS08935 (MT340_008935) - 1803672..1804226 (-) 555 WP_243589642.1 GNAT family N-acetyltransferase -
  MT340_RS08940 (MT340_008940) - 1804409..1804636 (+) 228 WP_243589643.1 TM2 domain-containing protein -
  MT340_RS08945 (MT340_008945) - 1804896..1805114 (-) 219 WP_243590259.1 IDEAL domain-containing protein -
  MT340_RS08950 (MT340_008950) comK/comK1 1805331..1805915 (+) 585 WP_243589644.1 competence protein ComK Regulator
  MT340_RS08965 (MT340_008965) - 1806482..1807645 (+) 1164 WP_243589645.1 MFS transporter -
  MT340_RS08970 (MT340_008970) - 1807728..1808183 (-) 456 WP_243589646.1 DUF2335 domain-containing protein -
  MT340_RS08975 (MT340_008975) - 1808173..1808388 (-) 216 WP_243589647.1 hypothetical protein -
  MT340_RS08980 (MT340_008980) - 1808702..1810150 (-) 1449 WP_243603774.1 N-acetylmuramoyl-L-alanine amidase -
  MT340_RS08985 (MT340_008985) - 1810159..1810455 (-) 297 WP_053016446.1 phage holin -
  MT340_RS08990 (MT340_008990) - 1810503..1810901 (-) 399 WP_243589650.1 hypothetical protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 23007.41 Da        Isoelectric Point: 9.3217

>NTDB_id=798496 MT340_RS08950 WP_243589644.1 1805331..1805915(+) (comK/comK1) [Staphylococcus sp. NRL 16/872]
MSKNEELNNTVYVIRKGDMVVKPIFNEFEQPQGTEIMKFDTTKEISPFKTQKIIERSCKFYGNNYLSKKAETQRIAGITS
KPPILLTPLFPTYFFPTHSDRLEENIWINMHYIADIKPLKNRRSKIIFANQETLTLNVSFHSLWHQYTNSIFYYYMVDKH
SRMKSNNPDMPIDYEKTTLNIFEALSHYSLLQDK

Nucleotide


Download         Length: 585 bp        

>NTDB_id=798496 MT340_RS08950 WP_243589644.1 1805331..1805915(+) (comK/comK1) [Staphylococcus sp. NRL 16/872]
ATGTCCAAAAATGAAGAACTCAATAATACTGTTTACGTCATCCGAAAAGGTGATATGGTAGTCAAACCTATTTTCAATGA
ATTTGAACAACCTCAAGGTACTGAAATAATGAAGTTTGATACTACCAAAGAAATTAGCCCTTTTAAAACACAAAAGATAA
TTGAACGCTCTTGTAAATTTTATGGTAACAATTATCTAAGTAAGAAAGCAGAAACACAACGTATTGCAGGTATCACAAGT
AAACCCCCTATTTTATTAACGCCACTATTTCCAACCTATTTTTTCCCGACACATTCAGATCGTTTAGAAGAAAATATATG
GATTAATATGCACTACATCGCAGATATTAAACCTCTTAAAAATCGTCGCAGTAAAATTATCTTCGCCAATCAAGAAACCC
TCACTTTAAATGTCTCTTTCCACAGTTTATGGCACCAATATACTAACTCAATTTTTTACTACTACATGGTTGATAAACAT
TCACGTATGAAATCAAACAATCCAGACATGCCAATTGACTACGAAAAAACTACACTTAACATTTTTGAAGCTCTTTCTCA
TTATTCATTATTACAAGATAAATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(11-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

71.196

94.845

0.675
  comK/comK1 Staphylococcus aureus N315

71.196

94.845

0.675